Is your (favourite) course not in there? Is a link dead? Did you find a typo?
Any contribution to this list is highly appreciated!
Selected topics (1)
39 Repositories
Page 1 / 2
Repository
Owner
Contributors
Topics
Stargazers
Days since last push
A comprehensive tutorial about GWAS and PRS
Contributors
Andries Marees
Variant analysis
Genomics
Days since last push
1279
License
-
A guided, intuitive introduction to genomics for software engineers. Curated by the community.
Contributors
Clay McLeod
Gavrie Philipson
Dave
PerezTheDev
Zafir Stojanovski
General
Genomics
Next generation sequencing
Variant analysis
Days since last push
235
License
other
Materials for short, half-day workshops
Contributors
marypiper
Will Gammerdinger
Radhika Khetani
Meeta Mistry
eberdan
General
Python
R
Rmarkdown
Unix/Linux
Version control
Enrichment analysis
FAIR data
Data visualization
Variant analysis
RNA-seq
Transcriptomics
Days since last push
71
License
other
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Contributors
Rick Masonbrink
Arun Seetharam
Andrew Severin
Siva Chudalayandi
Aleksandra E. Badaczewska-Dawid
General
Nextflow
Workflows
Data management
Data visualization
Unix/Linux
ATAC-seq
Comparative genomics
Epigenetics
Genome annotation
Genome assembly
Metagenomics
RNA-seq
Transcriptomics
Variant analysis
Days since last push
63
License
mit
Contributors
R. Nicolas Lou
Nina Overgaard Therkildsen
Variant analysis
Genomics
Next generation sequencing
Days since last push
1813
License
cc0-1.0
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
mit
Contributors
Jack Kang
liulab-dfci
Gali Bai
Ming Tang
Ninad P.Chaudhari
General
Next generation sequencing
Transcriptomics
Genomics
ATAC-seq
ChIP-seq
Epigenetics
Single-cell sequencing
Variant analysis
Days since last push
1640
License
mit
A course on genomics and bioinformatics from WashU
Contributors
Chris Miller
Jason Walker
John Garza
jennymckenzie
Susanna Kiwala
Genomics
Next generation sequencing
RNA-seq
Variant analysis
Data visualization
Long read sequencing
Single-cell sequencing
Days since last push
0
License
-
biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute
Contributors
Joana
NICOL RUEDA
Karin Näsvall
Melisa Olave
fseixas
Genomics
Next generation sequencing
Variant analysis
Days since last push
62
License
-
Contributors
Malachi Griffith
Zachary Skidmore
Huiming Xia
Obi Griffith
jeszyman
Next generation sequencing
Genomics
Transcriptomics
Variant analysis
CWL
Days since last push
146
License
mit
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
mit
Contributors
Dipannita Ghosh
Variant analysis
Genomics
Next generation sequencing
Days since last push
118
License
mit
Lecture notes/book in progress on computing for conservation genomics
mit
Contributors
Eric C. Anderson
Shyam Saladi
General
Unix/Linux
Version control
R
Genomics
Variant analysis
Genome assembly
Days since last push
977
License
mit
Contributors
Will Gammerdinger
Meeta Mistry
Elizabeth Partan
Radhika Khetani
hwick
Variant analysis
Next generation sequencing
Days since last push
126
License
-
GitHub for the SIB courses NGS - Genome variant analysis
cc-by-4.0
Contributors
Geert van Geest
Patricia Palagi
Next generation sequencing
Variant analysis
Days since last push
9
License
cc-by-4.0
Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.
cc-by-4.0
Contributors
Candace Savonen
jhudsl-robot
cmills2
Carrie Wright
Kate Isaac
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Spatial transcriptomics
Genome annotation
Epigenetics
ChIP-seq
Days since last push
1
License
cc-by-4.0
Workshop for CNV analysis with Bioconductor
Contributors
Sehyun Oh
Levi Waldron
Marcel Ramos Pérez
Next generation sequencing
Variant analysis
Days since last push
633
License
-
Workshop • Intro to Bioinformatics using NGS data • 5 days
Contributors
Roy Francis
Martin Dahlö
Malin Larsson
mayrhofer
diaek
Next generation sequencing
Genomics
Variant analysis
Days since last push
0
License
other
Workshop • Intro to Bioinformatics using NGS data • 5 days
Contributors
Roy Francis
Martin Dahlö
Malin Larsson
mayrhofer
diaek
Next generation sequencing
Unix/Linux
Variant analysis
RNA-seq
Days since last push
0
License
other
Course materials for an introduction to SARS-CoV-2 sequencing data analysis
Contributors
Hugo Tavares
Ankit Kumar (अंकित कुमार)
bsalehe
Sam Sims
Genomics
Variant analysis
Days since last push
777
License
other
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
gpl-3.0
Contributors
rlegendre
Stéphanie Le Gras
Nadia Bessoltane
Bastien Job
mzytnicki
Next generation sequencing
Variant analysis
RNA-seq
ChIP-seq
Unix/Linux
R
Days since last push
0
License
gpl-3.0
Contributors
Flavio Lombardo
Geert van Geest
Variant analysis
Next generation sequencing
Genomics
Days since last push
4
License
cc-by-4.0
This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course
Contributors
j-darocha
z-w123
Liã Bárbara Arruda
Idowu Olawoye
msuareze
Genomics
Unix/Linux
Variant analysis
Days since last push
818
License
other
Learn to execute a successful GWAS experiment from design to analysis.
cc0-1.0
Contributors
najoshi
Hannah Lyman
Matt Settles
Keith M.
Variant analysis
Statistics
Next generation sequencing
R
Days since last push
563
License
cc0-1.0
Cancer Analysis workshop 2021
Contributors
Canadian Bioinformatics Workshops
Heather Gibling
Emma Bell
fmgcavalli
larunerdman
Genomics
Variant analysis
Single-cell sequencing
Transcriptomics
Multiomics
Enrichment analysis
Days since last push
1640
License
-
Nextflow Tutorial - Variant Calling Edition
Contributors
Sateesh_Peri
Workflows
Nextflow
Variant analysis
Days since last push
957
License
-
Topics