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18 Repositories
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Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
cc0-1.0
Contributors
Matt Settles
Hannah Lyman
najoshi
Single-cell sequencing
RNA-seq
Transcriptomics
R
Days since last push
1269
License
cc0-1.0
Learn to execute a successful GWAS experiment from design to analysis.
cc0-1.0
Contributors
najoshi
Hannah Lyman
Matt Settles
Keith M.
Variant analysis
Statistics
Next generation sequencing
R
Days since last push
564
License
cc0-1.0
A three day hands-on workshop for researchers interested in single cell RNA-Seq
cc0-1.0
Contributors
Hannah Lyman
jessyjli
bpdurbin
Single-cell sequencing
Transcriptomics
RNA-seq
R
Days since last push
1023
License
cc0-1.0
ATAC-Seq, ChIP-Seq, and whole genome bisulfite! An introduction to analyzing some of the most popular types of epigenetic data.
bsd-3-clause
Contributors
Matt Settles
Hannah Lyman
jessyjli
najoshi
Sam Hunter
Epigenetics
Next generation sequencing
ChIP-seq
ATAC-seq
Days since last push
1269
License
bsd-3-clause
Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniques.
cc0-1.0
Contributors
jessyjli
Sam Hunter
Hannah Lyman
Matt Settles
Genome assembly
Next generation sequencing
Long read sequencing
Days since last push
1269
License
cc0-1.0
Contributors
jessyjli
Hannah Lyman
bpdurbin
Matt Settles
Single-cell sequencing
Transcriptomics
RNA-seq
R
Days since last push
1161
License
cc0-1.0
Contributors
jessyjli
bpdurbin
Hannah Lyman
RNA-seq
Transcriptomics
R
Days since last push
485
License
cc0-1.0
From SNP and structural variant calling to GWAS. Workshop cancelled due to public health concerns.
bsd-3-clause
Contributors
Hannah Lyman
Variant analysis
Next generation sequencing
Days since last push
1269
License
bsd-3-clause
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
bsd-3-clause
Contributors
najoshi
Sam Hunter
Hannah Lyman
jessyjli
Matt Settles
General
Unix/Linux
R
Python
Cloud computing
Days since last push
1269
License
bsd-3-clause
A single-day workshop on Trajectory and Velocity Analyses.
cc0-1.0
Contributors
Hannah Lyman
Matt Settles
Single-cell sequencing
RNA-seq
Transcriptomics
R
Days since last push
1866
License
cc0-1.0
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
bsd-3-clause
Contributors
najoshi
Unix/Linux
Days since last push
1112
License
bsd-3-clause
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
bsd-3-clause
Contributors
najoshi
Python
Days since last push
1175
License
bsd-3-clause
A one-day exploration of a 10x V(D)J experiment for researchers with some knowledge of scRNA-seq experiments
cc0-1.0
Contributors
Hannah Lyman
Single-cell sequencing
RNA-seq
Transcriptomics
R
Days since last push
1191
License
cc0-1.0
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
bsd-3-clause
Contributors
najoshi
R
Days since last push
1207
License
bsd-3-clause
An introduction to spatial transcriptomics using 10x Genomics Visium datat.
gpl-3.0
Contributors
Hannah Lyman
Spatial transcriptomics
R
RNA-seq
Transcriptomics
Days since last push
1386
License
gpl-3.0
Contributors
jessyjli
bpdurbin
Hannah Lyman
Matt Settles
Single-cell sequencing
RNA-seq
Transcriptomics
R
Days since last push
1533
License
cc0-1.0
Three day workshop offered in partnership with PacBio. Learn all about the possibilities of full length isoform sequencing from PacBio experts and experienced Core personnel!
bsd-3-clause
Contributors
Matt Settles
Hannah Lyman
najoshi
Long read sequencing
Transcriptomics
Days since last push
1848
License
bsd-3-clause
Use high-throughput sequencing (HTS) of amplicons to understand the composition and functional content of microbial communities.
cc0-1.0
Contributors
Matt Settles
Hannah Lyman
Metagenomics
Next generation sequencing
R
Days since last push
1961
License
cc0-1.0
Topics