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Displaying repositories of
Teaching materials at the Harvard Chan Bioinformatics Core
17 Repositories
Page 1 / 1
Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Contributors
Meeta Mistry
marypiper
Radhika Khetani
Jihe Liu
Will Gammerdinger
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
43
License
-
Materials for short, half-day workshops
Contributors
marypiper
Will Gammerdinger
Radhika Khetani
Meeta Mistry
eberdan
General
Python
R
Rmarkdown
Unix/Linux
Version control
Enrichment analysis
FAIR data
Data visualization
Variant analysis
RNA-seq
Transcriptomics
Days since last push
72
License
other
Intro to ChIPseq using HPC
Contributors
Meeta Mistry
marypiper
Radhika Khetani
Chris Fields
Ilya Sytchev
ChIP-seq
Days since last push
1341
License
-
Contributors
Meeta Mistry
Radhika Khetani
marypiper
Will Gammerdinger
Jihe Liu
Transcriptomics
RNA-seq
Days since last push
127
License
-
Introduction to bulk RNA-seq
Contributors
Radhika Khetani
Meeta Mistry
Will Gammerdinger
Jihe Liu
eberdan
Transcriptomics
RNA-seq
Days since last push
200
License
-
Contributors
Meeta Mistry
Jihe Liu
Will Gammerdinger
marypiper
Radhika Khetani
ChIP-seq
Next generation sequencing
Days since last push
200
License
cc0-1.0
Contributors
Radhika Khetani
Will Gammerdinger
Jihe Liu
marypiper
Meeta Mistry
R
Days since last push
37
License
-
Contributors
Radhika Khetani
Will Gammerdinger
Meeta Mistry
Jihe Liu
Noor Sohail
Unix/Linux
Days since last push
8
License
-
Six hour hands-on to creating publication-quality plots in R
Contributors
marypiper
Radhika Khetani
Meeta Mistry
Will Gammerdinger
Jihe Liu
Data visualization
R
Days since last push
196
License
-
An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
cc0-1.0
Contributors
Meeta Mistry
Will Gammerdinger
Upen Bhattarai
Elizabeth Partan
hwick
ChIP-seq
ATAC-seq
Enrichment analysis
R
Days since last push
196
License
cc0-1.0
Contributors
Will Gammerdinger
Meeta Mistry
Elizabeth Partan
Radhika Khetani
hwick
Variant analysis
Next generation sequencing
Days since last push
127
License
-
Tutorials on accessing public reference and genomic data
Contributors
Radhika Khetani
marypiper
Meeta Mistry
Will Gammerdinger
Next generation sequencing
FAIR data
Genomics
Days since last push
196
License
-
Short course describing the considerations for a successful RNA-seq experiment
Contributors
Meeta Mistry
Will Gammerdinger
Jihe Liu
RNA-seq
Transcriptomics
Next generation sequencing
Statistics
Days since last push
196
License
other
Contributors
hwick
Radhika Khetani
Will Gammerdinger
Meeta Mistry
Jihe Liu
Reproducibility
Version control
R
Rmarkdown
Days since last push
171
License
-
June 5, 2019
Contributors
Radhika Khetani
Will Gammerdinger
Sarah Boswell
Jihe Liu
RNA-seq
Next generation sequencing
Transcriptomics
Days since last push
196
License
-
RNA-seq experimental design and analysis
Contributors
Radhika Khetani
Will Gammerdinger
Meeta Mistry
RNA-seq
Next generation sequencing
Transcriptomics
Days since last push
196
License
-
Teaching RNA-seq experimental design and analysis + data storage and sharing for genomics data
Contributors
Radhika Khetani
Will Gammerdinger
RNA-seq
Transcriptomics
Next generation sequencing
Days since last push
196
License
-
Topics