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17 Repositories
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Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Intro to ChIPseq using HPC
Contributors
Meeta Mistry
marypiper
Radhika Khetani
Chris Fields
Ilya Sytchev
ChIP-seq
Days since last push
1340
License
-
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
mit
Contributors
Jack Kang
liulab-dfci
Gali Bai
Ming Tang
Maarten de Vries
General
Next generation sequencing
Transcriptomics
Genomics
ATAC-seq
ChIP-seq
Epigenetics
Single-cell sequencing
Variant analysis
Days since last push
1640
License
mit
Contributors
Meeta Mistry
Jihe Liu
Will Gammerdinger
marypiper
Radhika Khetani
ChIP-seq
Next generation sequencing
Days since last push
199
License
cc0-1.0
An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
cc0-1.0
Contributors
Meeta Mistry
Will Gammerdinger
Upen Bhattarai
Elizabeth Partan
hwick
ChIP-seq
ATAC-seq
Enrichment analysis
R
Days since last push
195
License
cc0-1.0
workshop website on readthedocs
Contributors
agata-sm
vincent-van-hoef
orzechoj
LouellaVasquez33
C. Navarro
Epigenetics
ChIP-seq
ATAC-seq
Single-cell sequencing
Next generation sequencing
Days since last push
122
License
-
Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.
cc-by-4.0
Contributors
Candace Savonen
jhudsl-robot
cmills2
Carrie Wright
Kate Isaac
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Spatial transcriptomics
Genome annotation
Epigenetics
ChIP-seq
Days since last push
1
License
cc-by-4.0
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
gpl-3.0
Contributors
rlegendre
Stéphanie Le Gras
Nadia Bessoltane
Bastien Job
mzytnicki
Next generation sequencing
Variant analysis
RNA-seq
ChIP-seq
Unix/Linux
R
Days since last push
0
License
gpl-3.0
EuroBioc 2020 Workshop: ChIP and ATAC analysis with DiffBind
cc-by-4.0
Contributors
Kevin Rue-Albrecht
Rory Stark
ChIP-seq
Days since last push
1690
License
cc-by-4.0
Contributors
Kai Hu
ChIP-seq
Days since last push
1900
License
other
Contributors
Canadian Bioinformatics Workshops
edsu7
David Bujold
J. Hector Galvez
zhibinlu
Epigenetics
ChIP-seq
Next generation sequencing
Days since last push
329
License
-
Biology-informed Multiomics Data Integration and Visualization
cc-by-4.0
Contributors
Deepak Tanwar
Geert van Geest
Multiomics
ATAC-seq
RNA-seq
ChIP-seq
Days since last push
259
License
cc-by-4.0
ATAC-Seq, ChIP-Seq, and whole genome bisulfite! An introduction to analyzing some of the most popular types of epigenetic data.
bsd-3-clause
Contributors
Matt Settles
jessyjli
Hannah Lyman
najoshi
Sam Hunter
Epigenetics
Next generation sequencing
ChIP-seq
ATAC-seq
Days since last push
1268
License
bsd-3-clause
Contributors
Edmund Miller
Salehkarim21
syamauchi2000
muneeryaqub
hxf190002
Genomics
High performance computing
Nextflow
Reproducibility
Containerization
Version control
Singularity
Epigenetics
ChIP-seq
Unix/Linux
RNA-seq
Variant analysis
Julia
Days since last push
906
License
-
Training material. ChIP-Seq section. Aviesan Bioinformatic School
Contributors
Denis Puthier
Jacques van Helden
ChIP-seq
Next generation sequencing
Days since last push
4020
License
-
Contributors
Canadian Bioinformatics Workshops
Epigenetics
ChIP-seq
Days since last push
332
License
-
Contributors
Edmund Miller
Salehkarim21
hxf190002
muneeryaqub
syamauchi2000
Workflows
Snakemake
Reproducibility
Unix/Linux
ATAC-seq
ChIP-seq
Epigenetics
Genomics
RNA-seq
Galaxy
Days since last push
793
License
-
Topics