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50 Repositories
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Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Using Git and GitHub with R, Rstudio, and R Markdown
Contributors
Jennifer (Jenny) Bryan
Dean Attali
Jim Hester
Jon Calder
Noam Ross
R
Version control
Days since last push
641
License
other
The biggest collection of R books (and maybe later some other resources too)
Contributors
Oscar Baruffa
Eric Leung
Matt Roumaya
Bryan Shalloway
Maëlle Salmon
R
Data science
Data visualization
Machine learning
Statistics
Version control
Workflows
Days since last push
192
License
-
Version Control with Git
Contributors
Ivan Gonzalez
K.E. Koziar
Martino Sorbaro
Raniere Silva
Madicken Munk
Version control
Days since last push
1
License
other
Materials for short, half-day workshops
Contributors
marypiper
Will Gammerdinger
Radhika Khetani
Meeta Mistry
eberdan
General
Python
R
Rmarkdown
Unix/Linux
Version control
Enrichment analysis
FAIR data
Data visualization
Variant analysis
RNA-seq
Transcriptomics
Days since last push
104
License
other
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Workshops presented by the Gladstone Bioinformatics Core
Contributors
Natalie Gill
Ayushi Agrawal
reubenthomas
Kristina Hanspers
MichelaTr
General
R
Version control
Genomics
Transcriptomics
Single-cell sequencing
RNA-seq
Pathways and Networks
Data visualization
Statistics
ATAC-seq
Machine learning
Unix/Linux
Days since last push
28
License
-
130
OBO Organized Knowledge: Training materials for becoming an OBO engineer
cc0-1.0
Contributors
Nicole Vasilevsky
Nico Matentzoglu
Shawn Tan
Sarah Gehrke
Valentina Cipriani
Data management
Ontology
Knowledge graph
Version control
FAIR data
GNU Make
SPARQL
Days since last push
26
License
cc0-1.0
Melbourne Bioinformatics documentation in markdown format
Contributors
Vini Salazar
Vicky Perreau
Clare Sloggett
Simon Gladman
Anna Syme
General
Unix/Linux
Data management
Transcriptomics
RNA-seq
Genomics
Version control
Days since last push
92
License
-
Contributors
Liliane Conteville
Ana Julia Velez Rueda
Franco Leonardo Bulgarelli
ivanafeldfeber
General
Version control
Unix/Linux
Python
Days since last push
1349
License
cc0-1.0
Lecture notes/book in progress on computing for conservation genomics
mit
Contributors
Eric C. Anderson
Shyam Saladi
General
Unix/Linux
Version control
R
Genomics
Variant analysis
Genome assembly
Days since last push
1010
License
mit
Introduction to version control with Git - Why we want to track versions and how to go back in time to a working version
cc-by-4.0
Contributors
Radovan Bast
Richard Darst
Sabry Razick
Kjartan Thor Wikfeldt
Bjørn Lindi
Version control
Days since last push
29
License
cc-by-4.0
Contributors
Oleksiy Rudenko
Petro Fedorenko
arsenkhy
Version control
Days since last push
1566
License
mit
Good Enough Practices in Scientific Computing
Contributors
Edward Wallace
Tomasz Zielinski
Allen Lee
Emma Wilson
Zhian N. Kamvar
Reproducibility
Data management
Version control
Days since last push
1
License
other
Version control training course using Git
Contributors
Gerard Capes
Raniere Silva
François Michonneau
Maxim Belkin
Greg Wilson
Version control
Days since last push
265
License
other
Contributors
Guillaume Gautier
Python
Version control
Days since last push
1849
License
mit
Introduction to Reproducible Publications with Quarto
Contributors
Renata Curty
Torin White
actions-user
Ian Lessing
Julien Brun
R
Version control
Rmarkdown
Reproducibility
Days since last push
1
License
other
Training materials for zero to hero training in version control through git, github and gitkraken
Contributors
Anna Krystalli
Neil Shephard
Michael Foster
Shaun Donnelly
David Wyld
Version control
Days since last push
365
License
-
Contributors
hwick
Radhika Khetani
Will Gammerdinger
Meeta Mistry
Jihe Liu
Reproducibility
Version control
R
Rmarkdown
Days since last push
1
License
-
Contributors
Radovan Bast
Richard Darst
Kjartan Thor Wikfeldt
Johan Hellsvik
dhanyapushpadas
Version control
Days since last push
29
License
cc-by-4.0
This is a Git & GitHub course material
cc-by-4.0
Contributors
Bruna Piereck
Alexander
Tuur Muyldermans
hackmd-deploy
James Collier
Version control
Days since last push
1
License
cc-by-4.0
Reproducible Science Curriculum Lesson for Version Control
Contributors
Raniere Silva
Greg Wilson
François Michonneau
Ciera Martinez
Abby Cabunoc Mayes
Version control
R
Reproducibility
Days since last push
1421
License
other
Step-by-step guide for building Python and R simulation models as part of a reproducible analytical pipeline (RAP).
mit
Contributors
Amy Heather
Reproducibility
Python
R
Version control
Quarto
Statistics
Data science
Days since last push
58
License
mit
Contributors
Rika Gorn
Mine Cetinkaya-Rundel
Tom Mock
Version control
Containerization
Docker
Days since last push
813
License
cc-by-sa-4.0
Version Control with Git
Contributors
Ivan Gonzalez
Raniere Silva
Daisie Huang
Stephen Appel
Patrick Shriwise
Version control
Days since last push
1
License
other
Collaborating and sharing using GitHub without command line.
cc-by-4.0
Contributors
Radovan Bast
Richard Darst
MatiasJJ
Kerstin Lenk
Version control
Days since last push
981
License
cc-by-4.0
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