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50 Repositories
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Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Contributors
Bobby Iliev
Marcelo Zárate
Eze Rodriguez
Robson Grangeiro
Steve M
Unix/Linux
Days since last push
37
License
mit
Data Science at the Command Line
Contributors
Jeroen Janssens
Rich Pauloo
Matt Pettis
Andrea Borruso
Christos Kontas
Unix/Linux
Days since last push
915
License
other
Contributors
Sundeep Agarwal
Unix/Linux
Days since last push
321
License
mit
:penguin: Linux command line and Scripting guide for beginner to intermediate users
mit
Contributors
Sundeep Agarwal
Unix/Linux
Days since last push
313
License
mit
The Unix Shell
Contributors
Gerard Capes
Gabriel A. Devenyi
Benson Muite
Christina K.
Raniere Silva
Unix/Linux
Days since last push
1
License
other
Materials for short, half-day workshops
Contributors
marypiper
Will Gammerdinger
Radhika Khetani
Meeta Mistry
eberdan
General
Python
R
Rmarkdown
Unix/Linux
Version control
Enrichment analysis
FAIR data
Data visualization
Variant analysis
RNA-seq
Transcriptomics
Days since last push
105
License
other
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Contributors
Sundeep Agarwal
Unix/Linux
Days since last push
322
License
mit
Learn Linux commands by playing a simple text adventure.
Unix/Linux
Days since last push
148
License
-
Workshops presented by the Gladstone Bioinformatics Core
Contributors
Natalie Gill
Ayushi Agrawal
reubenthomas
Kristina Hanspers
MichelaTr
General
R
Version control
Genomics
Transcriptomics
Single-cell sequencing
RNA-seq
Pathways and Networks
Data visualization
Statistics
ATAC-seq
Machine learning
Unix/Linux
Days since last push
28
License
-
Contributors
Sundeep Agarwal
Unix/Linux
Days since last push
322
License
mit
Contributors
Rick Masonbrink
Arun Seetharam
Andrew Severin
Siva Chudalayandi
Aleksandra E. Badaczewska-Dawid
General
Nextflow
Workflows
Data management
Data visualization
Unix/Linux
ATAC-seq
Comparative genomics
Epigenetics
Genome annotation
Genome assembly
Metagenomics
RNA-seq
Transcriptomics
Variant analysis
Days since last push
97
License
mit
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
cc0-1.0
Contributors
Andrew Jahn
Dan Levitas
Yaroslav Halchenko
Eric Holscher
John T. Johnson
Image analysis
Unix/Linux
Days since last push
0
License
cc0-1.0
Example based guide for specialized text processing with GNU Coreutils
mit
Contributors
Sundeep Agarwal
Unix/Linux
Days since last push
313
License
mit
Contributors
Malachi Griffith
Kelsy Cotto
Obi Griffith
Huiming Xia
Kartik Singhal
RNA-seq
Unix/Linux
R
Next generation sequencing
Single-cell sequencing
Days since last push
3
License
mit
Melbourne Bioinformatics documentation in markdown format
Contributors
Vini Salazar
Vicky Perreau
Clare Sloggett
Simon Gladman
Anna Syme
General
Unix/Linux
Data management
Transcriptomics
RNA-seq
Genomics
Version control
Days since last push
92
License
-
Introduction to the Command Line for Genomics
Contributors
Erin Becker
Anita Schürch
Tracy Teal
Sheldon McKay
jessicalumian
Unix/Linux
Genomics
Days since last push
1
License
other
Contributors
Radhika Khetani
Will Gammerdinger
Meeta Mistry
Jihe Liu
Noor Sohail
Unix/Linux
Days since last push
40
License
-
Contributors
Liliane Conteville
Ana Julia Velez Rueda
Franco Leonardo Bulgarelli
ivanafeldfeber
General
Version control
Unix/Linux
Python
Days since last push
1349
License
cc0-1.0
Genomics Workshop Overview
Contributors
Erin Becker
Tracy Teal
maneesha
Toby Hodges
Bob Freeman
Genomics
Next generation sequencing
Unix/Linux
Cloud computing
Days since last push
1
License
other
Lecture notes/book in progress on computing for conservation genomics
mit
Contributors
Eric C. Anderson
Shyam Saladi
General
Unix/Linux
Version control
R
Genomics
Variant analysis
Genome assembly
Days since last push
1010
License
mit
Site to help biologists wade their way into bioinformatics.
Contributors
Mike Lee
Marcus Fedarko
C. Titus Brown
Luiz Irber
General
R
Unix/Linux
Genomics
Days since last push
210
License
other
Extra Unix Shell Material
Contributors
vuw-ecs-kevin
Christina K.
Andy Boughton
François Michonneau
Abby Cabunoc Mayes
Unix/Linux
Days since last push
926
License
other
Materials for the Training and Engagement Website
Contributors
Marisa Lim
Rayna M Harris
Abhijna Parigi
Jeremy Walter
Saranya Canchi
General
Cloud computing
RNA-seq
Python
Unix/Linux
Snakemake
Days since last push
1026
License
other
Contributors
Raniere Silva
Greg Wilson
François Michonneau
Maxim Belkin
Abby Cabunoc Mayes
Unix/Linux
Python
Days since last push
2110
License
other
Topics