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10 Repositories

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R Markdown: The Definitive Guide (published by Chapman & Hall/CRC in July 2018)
Contributors
Yihui Xie Yihui Xie
Christophe Dervieux Christophe Dervieux
Aaron Simumba Aaron Simumba
Peter Baumgartner Peter Baumgartner
Salim B Salim B
+ 25 more
R Rmarkdown
Days since last push
240
License
other
R Markdown Cookbook. A range of tips and tricks to make better use of R Markdown.
Contributors
Yihui Xie Yihui Xie
Christophe Dervieux Christophe Dervieux
Emily Riederer Emily Riederer
Imgbot Imgbot
atusy atusy
+ 23 more
R Rmarkdown
Days since last push
14
License
-
Materials for short, half-day workshops
Contributors
marypiper marypiper
Will Gammerdinger Will Gammerdinger
Radhika Khetani Radhika Khetani
Meeta Mistry Meeta Mistry
eberdan eberdan
+ 9 more
General Python R Rmarkdown Unix/Linux Version control Enrichment analysis FAIR data Data visualization Variant analysis RNA-seq Transcriptomics
Days since last push
71
License
other
Slides for the Intro to RMarkdown workshop
Contributors
Tom Mock Tom Mock
R Rmarkdown
Days since last push
1619
License
-
Introduction to Reproducible Publications with Quarto
Contributors
Renata Curty Renata Curty
Torin White Torin White
actions-user actions-user
Ian Lessing Ian Lessing
Julien Brun Julien Brun
+ 5 more
R Version control Rmarkdown Reproducibility
Days since last push
2
License
other
Contributors
hwick hwick
Radhika Khetani Radhika Khetani
Will Gammerdinger Will Gammerdinger
Meeta Mistry Meeta Mistry
Jihe Liu Jihe Liu
+ 1 more
Reproducibility Version control R Rmarkdown
Days since last push
170
License
-
Biological Data Science Workshops
Contributors
Stephen Turner Stephen Turner
R Data visualization Rmarkdown RNA-seq Genomics Statistics Data science General
Days since last push
1623
License
other
Repository for lesson materials on Literate Programming
Contributors
Raniere Silva Raniere Silva
Greg Wilson Greg Wilson
François Michonneau François Michonneau
Hilmar Lapp Hilmar Lapp
Ciera Martinez Ciera Martinez
+ 34 more
R Rmarkdown
Days since last push
2296
License
other
Contributors
Carrie Wright Carrie Wright
Candace Savonen Candace Savonen
jhudsl-robot jhudsl-robot
actions-user actions-user
R Rmarkdown Version control
Days since last push
427
License
cc-by-4.0
ELIXIR-EE training course on R and RStudio basic usage. Targeted to learners who have no or very little prior experience with R and RStudio.
Contributors
Nurlan Kerimov Nurlan Kerimov
R Rmarkdown
Days since last push
206
License
mit

About

Glittr.org is a curated list of educational material for the computational life sciences.

All material is:

  • In a GitHub or GitLab repository
  • Free to use
  • Written in markdown or similar

If you want to cite or know more about Glittr.org, check out our paper in PLOS ONE!

NOTE: This list of courses is selected only based on the above criteria.
There are no checks on quality. In case there is no license associated with the repository, copyright belongs to the author, and you cannot copy or modify it for any reason other than personal use.

Terms of use

Developed, maintained and curated by:
Geert van Geest
Patricia Palagi
Yann Haefliger

Data last updated: 2026-10-02 01:17:47

Swiss Institute of Bioinformatics

Initiative of the the SIB Training Group.
Interested in SIB courses? Visit our website.

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