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51 Repositories
Page 1 / 3
Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Book repository for The Turing Way: a how to guide for reproducible, ethical and collaborative data science
Contributors
Malvika Sharan
Jim Madge
Esther Plomp
Becky Arnold
Sarah Gibson
Data science
Reproducibility
Days since last push
10
License
other
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
325
Open source book about making Python packages.
Contributors
Tomas Beuzen
Tiffany A. Timbers
DC Slagel
Ben Dichter
Michael Kerber
Python
Reproducibility
Days since last push
2
License
other
Python Programming for Biologists
Contributors
R. Burke Squires
Python
Machine learning
Data visualization
Workflows
Snakemake
Reproducibility
Days since last push
238
License
-
The FAIR cookbook, containing recipes to make your data more FAIR. Find the rendered version on:
Contributors
Philippe Rocca-Serra
Dominique
ramGranell
Danielle Welter
Susanna-Assunta Sansone
FAIR data
Reproducibility
Days since last push
10
License
-
NBIS/Elixir course: Tools for Reproducible Research
cc-by-4.0
Contributors
John Sundh
Erik Fasterius
Leif Väremo
Rasmus Ågren
Verena Kutschera
Reproducibility
Data management
Days since last push
10
License
cc-by-4.0
Introduction to Conda for (Data) Scientists
Contributors
Raniere Silva
David R. Pugh
Greg Wilson
François Michonneau
Maxim Belkin
Python
Reproducibility
Days since last push
1309
License
other
The Organization lesson for the Reproducible Science Curriculum
Contributors
Raniere Silva
Greg Wilson
François Michonneau
Hilmar Lapp
Ciera Martinez
Reproducibility
Days since last push
1821
License
other
Good Enough Practices in Scientific Computing
Contributors
Edward Wallace
Tomasz Zielinski
Allen Lee
Emma Wilson
Zhian N. Kamvar
Reproducibility
Data management
Version control
Days since last push
2
License
other
Good Enough Practices in Scientific Computing
Contributors
Edward Wallace
Tomasz Zielinski
Allen Lee
Emma Wilson
Zhian N. Kamvar
Data management
Reproducibility
Days since last push
2
License
other
Train-the-trainer handbook for making training materials FAIR
Contributors
Patricia Palagi
Bruna Piereck
Geert van Geest
olisand
Melissa Burke
FAIR data
Reproducibility
Days since last push
31
License
other
Building Better Research Software
Contributors
Aleksandra Nenadic
Sarah Stevens
Sarah Gibson
Toby Hodges
Aman Goel
Reproducibility
FAIR data
Days since last push
2
License
other
Introduction to Reproducible Publications with Quarto
Contributors
Renata Curty
Torin White
actions-user
Ian Lessing
Julien Brun
R
Version control
Rmarkdown
Reproducibility
Days since last push
2
License
other
Introduction to Reproducible Publications with Quarto
Contributors
Renata Curty
Torin White
actions-user
Ian Lessing
Julien Brun
Reproducibility
Quarto
Days since last push
2
License
other
learn how to build a personal website using Quarto
Contributors
Samantha Shanny-Csik
Quarto
R
Reproducibility
Days since last push
48
License
-
An Introductory Workshop on Modern Data Analyses and Workflows for Reproducible Research in R
cc-by-4.0
Contributors
Luke W. Johnston
hchats
MaleneRevsbech
Helene Baek Juel
Anders Askeland
R
Reproducibility
Days since last push
2
License
cc-by-4.0
Home Repository for the CfRR website
Contributors
Liam Berrisford
Craig R. G. Willis
Dr. Chris Tibbs
Michael Saunby
Thomas Hawes
Reproducibility
R
Python
Unix/Linux
Data management
Days since last push
0
License
-
Building Websites with Jekyll & GitHub Pages.
Contributors
Toby Hodges
Aleksandra Nenadic
Raniere Silva
François Michonneau
Maxim Belkin
Reproducibility
FAIR data
Days since last push
1091
License
other
Contributors
hwick
Radhika Khetani
Will Gammerdinger
Meeta Mistry
Jihe Liu
Reproducibility
Version control
R
Rmarkdown
Days since last push
169
License
-
Resources for automation tutorials
Contributors
Raniere Silva
François Michonneau
Greg Wilson
Abby Cabunoc Mayes
Maxim Belkin
R
Reproducibility
Days since last push
2296
License
other
Managing Open and Reproducible Computational Projects
Contributors
Malvika Sharan
Julien Colomb
Lydia France
Jo Havemann
Zhian N. Kamvar
Reproducibility
FAIR data
Data management
Days since last push
619
License
other
Démonstration d’outils de bioinfo dans le cadre d’un projet
Contributors
Thomas Denecker
clairetn
General
Reproducibility
Containerization
Snakemake
Next generation sequencing
Transcriptomics
RNA-seq
Days since last push
1904
License
other
Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.
Contributors
Greg Wilson
Kelly Sovacool, PhD
Raniere Silva
François Michonneau
Maxim Belkin
R
Reproducibility
Days since last push
218
License
other
Reproducible Science Curriculum Lesson for Version Control
Contributors
Raniere Silva
Greg Wilson
François Michonneau
Ciera Martinez
Abby Cabunoc Mayes
Version control
R
Reproducibility
Days since last push
1388
License
other
Step-by-step guide for building Python and R simulation models as part of a reproducible analytical pipeline (RAP).
mit
Contributors
Amy Heather
Reproducibility
Python
R
Version control
Quarto
Statistics
Data science
Days since last push
24
License
mit
Topics