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43 Repositories
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Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Materials for short, half-day workshops
Contributors
marypiper
Will Gammerdinger
Radhika Khetani
Meeta Mistry
eberdan
General
Python
R
Rmarkdown
Unix/Linux
Version control
Enrichment analysis
FAIR data
Data visualization
Variant analysis
RNA-seq
Transcriptomics
Days since last push
96
License
other
The FAIR cookbook, containing recipes to make your data more FAIR. Find the rendered version on:
Contributors
Philippe Rocca-Serra
Dominique
ramGranell
Danielle Welter
Susanna-Assunta Sansone
FAIR data
Reproducibility
Days since last push
35
License
-
128
OBO Organized Knowledge: Training materials for becoming an OBO engineer
cc0-1.0
Contributors
Nicole Vasilevsky
Nico Matentzoglu
Shawn Tan
Sarah Gehrke
Valentina Cipriani
Data management
Ontology
Knowledge graph
Version control
FAIR data
GNU Make
SPARQL
Days since last push
18
License
cc0-1.0
ELIXIR Research Data Management Toolkit - Find the answers to your research data management questions here.
Contributors
Bert Droesbeke
floradanna
Korbinian Bösl
Munazah
Federico Bianchini
Data management
FAIR data
Days since last push
14
License
other
Opensciency - A core open science curriculum by and for the research community.
Contributors
Chris Erdmann
Esther Plomp
andreamedinasmith
Hugh Shanahan
Malvika Sharan
Data management
FAIR data
Days since last push
1007
License
other
Tutorials on accessing public reference and genomic data
Contributors
Radhika Khetani
marypiper
Meeta Mistry
Will Gammerdinger
Next generation sequencing
FAIR data
Genomics
Days since last push
221
License
-
Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
Contributors
Marcel Ramos Pérez
Levi Waldron
Multiomics
FAIR data
Days since last push
481
License
-
Train-the-trainer handbook for making training materials FAIR
Contributors
Patricia Palagi
Bruna Piereck
Geert van Geest
olisand
Melissa Burke
FAIR data
Reproducibility
Days since last push
56
License
other
Building Better Research Software
Contributors
Aleksandra Nenadic
Sarah Stevens
Sarah Gibson
Toby Hodges
Aman Goel
Reproducibility
FAIR data
Days since last push
0
License
other
Building Websites with Jekyll & GitHub Pages.
Contributors
Toby Hodges
Aleksandra Nenadic
Raniere Silva
François Michonneau
Maxim Belkin
Reproducibility
FAIR data
Days since last push
1117
License
other
Contributors
Robert Haase
Mara Lampert
Yixin Huang
Lea Gihlein
Clement Caporal
Data management
FAIR data
Image analysis
Days since last push
3
License
cc-by-4.0
Managing Open and Reproducible Computational Projects
Contributors
Malvika Sharan
Julien Colomb
Lydia France
Jo Havemann
Zhian N. Kamvar
Reproducibility
FAIR data
Data management
Days since last push
644
License
other
Formation continue sur la FAIRisation du code informatique
agpl-3.0
Contributors
Thomas Denecker
Helene Chiapello
Celine Hernandez
Alexandra Louis
Thomas Vannier
FAIR data
Data management
Days since last push
1595
License
agpl-3.0
FAIR in (biological) practice
Contributors
Tomasz Zielinski
aromanowski
Ines Boehm
zajawka
livia-scorza
FAIR data
Reproducibility
Data management
Days since last push
0
License
other
Contributors
penyuan
James Thomas
Reproducibility
FAIR data
Data management
Days since last push
284
License
cc-by-sa-4.0
Contributors
Stephan
MNV1988
Martijn Kersloot
Federico Bianchini
MijkeJetten
FAIR data
Data management
Reproducibility
Days since last push
27
License
cc-by-4.0
Repo supporting the manuscript 'Journeying towards best practice data management in biodiversity genomics'.
cc-by-4.0
Contributors
Natalie Forsdick
Dinindu Senanayake
JHart-UC
Data management
FAIR data
Days since last push
98
License
cc-by-4.0
Methodology for FAIR-by-Design Learning Materials Git Book
cc-by-4.0
Contributors
sonjafiliposka
korvoj
amisev1971
FAIR data
Data management
Days since last push
852
License
cc-by-4.0
Contributors
feichtingerm
Emily J. Kate
Data management
FAIR data
Days since last push
384
License
cc-by-4.0
♻️ FAIR Research Data Coursebook repository. Created and maintained by the Maastricht University Library based on the Library Carpentries lesson template
Contributors
Raniere Silva
François Michonneau
Maxim Belkin
Greg Wilson
Zhian N. Kamvar
FAIR data
Data management
Days since last push
598
License
other
Support for the IFB training on FAIR data. Web site: https://ifb-elixirfr.github.io/IFB-FAIR-data-training/
agpl-3.0
Contributors
Thomas Denecker
hackmd-deploy
Helene Chiapello
Fred de Lamotte
Julien Seiler
FAIR data
Data management
Reproducibility
Days since last push
1964
License
agpl-3.0
The course Open Science delivered by SciLifeLab Training Hub
Contributors
InekeL
Nina Norgren
David Rayner
FAIR data
Data management
Days since last push
152
License
-
GBIF training courses
Contributors
GBIF Crowdin
Laura Russell
GBIF Jenkins Bot
Marie Grosjean
Matt Blissett
Genomics
Population genetics
FAIR data
Metagenomics
Days since last push
0
License
-
Contributors
Thomas Vuillaume
Azza GAMGAMI
vincent-pollet
Karl Kosack
Maximilian Linhoff
Reproducibility
FAIR data
Version control
Days since last push
152
License
mit
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