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94 Repositories
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Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Contributors
tarachari3
Meichen Fang
Lior Pachter
Laura Luebbert, Ph.D.
Zitong Jerry Wang
General
Statistics
Next generation sequencing
Genomics
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
260
License
other
A guided, intuitive introduction to genomics for software engineers. Curated by the community.
Contributors
Clay McLeod
Gavrie Philipson
Dave
PerezTheDev
Precision Infinity
General
Genomics
Next generation sequencing
Variant analysis
Days since last push
235
License
other
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Contributors
Malachi Griffith
Kelsy Cotto
Obi Griffith
Huiming Xia
Kartik Singhal
RNA-seq
Unix/Linux
R
Next generation sequencing
Single-cell sequencing
Days since last push
53
License
mit
Contributors
R. Nicolas Lou
Nina Overgaard Therkildsen
Variant analysis
Genomics
Next generation sequencing
Days since last push
1813
License
cc0-1.0
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
mit
Contributors
Jack Kang
liulab-dfci
Gali Bai
Ming Tang
Ninad P.Chaudhari
General
Next generation sequencing
Transcriptomics
Genomics
ATAC-seq
ChIP-seq
Epigenetics
Single-cell sequencing
Variant analysis
Days since last push
1640
License
mit
110
The package wrapping the book, for deployment via the Bioconductor build system.
Contributors
actions-user
Aaron Lun
Hervé Pagès
Alan O'Callaghan
Nitesh Turaga
Single-cell sequencing
Transcriptomics
RNA-seq
Next generation sequencing
R
Days since last push
147
License
-
Contributors
Meeta Mistry
Jihe Liu
Will Gammerdinger
marypiper
Radhika Khetani
ChIP-seq
Next generation sequencing
Days since last push
199
License
cc0-1.0
A course on genomics and bioinformatics from WashU
Contributors
Chris Miller
Jason Walker
John Garza
jennymckenzie
Susanna Kiwala
Genomics
Next generation sequencing
RNA-seq
Variant analysis
Data visualization
Long read sequencing
Single-cell sequencing
Days since last push
0
License
-
Data Wrangling and Processing for Genomics
Contributors
Erin Becker
Fotis E. Psomopoulos
Taylor Reiter
Sheldon McKay
jessicalumian
Next generation sequencing
Genomics
Days since last push
3
License
other
biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute
Contributors
Joana
NICOL RUEDA
Karin Näsvall
Melisa Olave
fseixas
Genomics
Next generation sequencing
Variant analysis
Days since last push
62
License
-
This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
gpl-3.0
Contributors
Aurelien Dugourd
Javier Perales-Paton
Attila Gabor
Olga Ivanova
Charlotte Boys
Transcriptomics
RNA-seq
Next generation sequencing
Days since last push
1266
License
gpl-3.0
Contributors
Malachi Griffith
Zachary Skidmore
Huiming Xia
Obi Griffith
jeszyman
Next generation sequencing
Genomics
Transcriptomics
Variant analysis
CWL
Days since last push
146
License
mit
Genomics Workshop Overview
Contributors
Erin Becker
Tracy Teal
maneesha
Toby Hodges
Bob Freeman
Genomics
Next generation sequencing
Unix/Linux
Cloud computing
Days since last push
3
License
other
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
mit
Contributors
Dipannita Ghosh
Variant analysis
Genomics
Next generation sequencing
Days since last push
118
License
mit
Contributors
Roy Francis
Nima Rafati
jlorent
Jeanette Tångrot
Johan
Transcriptomics
RNA-seq
Next generation sequencing
Days since last push
930
License
gpl-3.0
This RNAseq data analysis tutorial is created for educational purpose
Contributors
Amarinder Singh Thind
Transcriptomics
RNA-seq
Next generation sequencing
Days since last push
225
License
-
Contributors
Will Gammerdinger
Meeta Mistry
Elizabeth Partan
Radhika Khetani
hwick
Variant analysis
Next generation sequencing
Days since last push
126
License
-
course about NGS data processing: genomics and transcriptomics
gpl-3.0
Contributors
Boas Pucker
Next generation sequencing
Transcriptomics
RNA-seq
Genomics
Days since last push
229
License
gpl-3.0
Tutorials on accessing public reference and genomic data
Contributors
Radhika Khetani
marypiper
Meeta Mistry
Will Gammerdinger
Next generation sequencing
FAIR data
Genomics
Days since last push
195
License
-
GitHub for the SIB courses NGS - Genome variant analysis
cc-by-4.0
Contributors
Geert van Geest
Patricia Palagi
Next generation sequencing
Variant analysis
Days since last push
9
License
cc-by-4.0
Project Organization and Management for Genomics
Contributors
Pete
Amanda Charbonneau
Debbie Paul
Tracy Teal
Erin Becker
Genomics
Next generation sequencing
Data management
Days since last push
3
License
other
Web-site for the 2020 CRUK CC Bioinformatics Summer School (Held virtually)
cc-by-4.0
Contributors
Mark Fernandes
Mark Dunning
Shamith Samarajiwa
sballereau
AshKernow
Next generation sequencing
Genomics
Days since last push
2037
License
cc-by-4.0
workshop website on readthedocs
Contributors
agata-sm
vincent-van-hoef
orzechoj
LouellaVasquez33
C. Navarro
R
Genomics
ATAC-seq
Multiomics
Next generation sequencing
Days since last push
122
License
-
workshop website on readthedocs
Contributors
agata-sm
vincent-van-hoef
orzechoj
LouellaVasquez33
C. Navarro
Epigenetics
ChIP-seq
ATAC-seq
Single-cell sequencing
Next generation sequencing
Days since last push
122
License
-
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