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80 Repositories
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Repository
Owner
Contributors
Topics
Stargazers
Days since last push
A list of interesting genome browser and genome visualization programs
mit
Contributors
Colin Diesh
Kari Lavikka
SEHI L'YI
Nathan Dunn
Sam Sims
Data visualization
Genomics
General
Days since last push
4
License
mit
A comprehensive tutorial about GWAS and PRS
Contributors
Andries Marees
Variant analysis
Genomics
Days since last push
1312
License
-
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Contributors
tarachari3
Meichen Fang
Lior Pachter
Laura Luebbert, Ph.D.
Zitong Jerry Wang
General
Statistics
Next generation sequencing
Genomics
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
294
License
other
A guided, intuitive introduction to genomics for software engineers. Curated by the community.
Contributors
Clay McLeod
Gavrie Philipson
Dave
PerezTheDev
Precision Infinity
General
Genomics
Next generation sequencing
Variant analysis
Days since last push
268
License
other
391
Contributors
Altuna Akalin
Federico Marini
Jona
Bora Uyar
Sarvesh Nikumbh
Genomics
R
Days since last push
786
License
-
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
1
License
mit
Tutorial on large language models for genomics
Contributors
Raphael Mourad
Large language models
Genomics
Machine learning
Artificial intelligence
Days since last push
517
License
-
Workshops presented by the Gladstone Bioinformatics Core
Contributors
Natalie Gill
Ayushi Agrawal
reubenthomas
Kristina Hanspers
MichelaTr
General
R
Version control
Genomics
Transcriptomics
Single-cell sequencing
RNA-seq
Pathways and Networks
Data visualization
Statistics
ATAC-seq
Machine learning
Unix/Linux
Days since last push
28
License
-
Compiled and pretty version of labs
Contributors
Michael Love
R
Genomics
Data visualization
Days since last push
2398
License
-
Melbourne Bioinformatics documentation in markdown format
Contributors
Vini Salazar
Vicky Perreau
Clare Sloggett
Simon Gladman
Anna Syme
General
Unix/Linux
Data management
Transcriptomics
RNA-seq
Genomics
Version control
Days since last push
92
License
-
Contributors
R. Nicolas Lou
Nina Overgaard Therkildsen
Variant analysis
Genomics
Next generation sequencing
Days since last push
1847
License
cc0-1.0
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
mit
Contributors
Jack Kang
liulab-dfci
Gali Bai
Ming Tang
Ninad P.Chaudhari
General
Next generation sequencing
Transcriptomics
Genomics
ATAC-seq
ChIP-seq
Epigenetics
Single-cell sequencing
Variant analysis
Days since last push
1673
License
mit
A course on genomics and bioinformatics from WashU
Contributors
Chris Miller
Jason Walker
John Garza
jennymckenzie
Susanna Kiwala
Genomics
Next generation sequencing
RNA-seq
Variant analysis
Data visualization
Long read sequencing
Single-cell sequencing
Days since last push
0
License
-
Data Wrangling and Processing for Genomics
Contributors
Erin Becker
Fotis E. Psomopoulos
Taylor Reiter
Sheldon McKay
jessicalumian
Next generation sequencing
Genomics
Days since last push
1
License
other
biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute
Contributors
Joana
NICOL RUEDA
Karin Näsvall
Melisa Olave
fseixas
Genomics
Next generation sequencing
Variant analysis
Days since last push
95
License
-
Introduction to the Command Line for Genomics
Contributors
Erin Becker
Anita Schürch
Tracy Teal
Sheldon McKay
jessicalumian
Unix/Linux
Genomics
Days since last push
1
License
other
Contributors
Malachi Griffith
Zachary Skidmore
Huiming Xia
Obi Griffith
jeszyman
Next generation sequencing
Genomics
Transcriptomics
Variant analysis
CWL
Days since last push
22
License
mit
Genomics Workshop Overview
Contributors
Erin Becker
Tracy Teal
maneesha
Toby Hodges
Bob Freeman
Genomics
Next generation sequencing
Unix/Linux
Cloud computing
Days since last push
1
License
other
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
mit
Contributors
Dipannita Ghosh
Variant analysis
Genomics
Next generation sequencing
Days since last push
152
License
mit
Lecture notes/book in progress on computing for conservation genomics
mit
Contributors
Eric C. Anderson
Shyam Saladi
General
Unix/Linux
Version control
R
Genomics
Variant analysis
Genome assembly
Days since last push
1010
License
mit
Site to help biologists wade their way into bioinformatics.
Contributors
Mike Lee
Marcus Fedarko
C. Titus Brown
Luiz Irber
General
R
Unix/Linux
Genomics
Days since last push
210
License
other
Intro to R and RStudio for Genomics
Contributors
Naupaka Zimmerman
Jason Williams
Yuka Takemon, PhD
Erin Becker
Ahmed Moustafa
R
Genomics
Days since last push
148
License
other
course about NGS data processing: genomics and transcriptomics
gpl-3.0
Contributors
Boas Pucker
Next generation sequencing
Transcriptomics
RNA-seq
Genomics
Days since last push
263
License
gpl-3.0
Tutorials on accessing public reference and genomic data
Contributors
Radhika Khetani
marypiper
Meeta Mistry
Will Gammerdinger
Next generation sequencing
FAIR data
Genomics
Days since last push
228
License
-
Project Organization and Management for Genomics
Contributors
Pete
Amanda Charbonneau
Debbie Paul
Tracy Teal
Erin Becker
Genomics
Next generation sequencing
Data management
Days since last push
1
License
other
Topics