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56 Repositories
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Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Contributors
Rick Masonbrink
Arun Seetharam
Andrew Severin
Siva Chudalayandi
Aleksandra E. Badaczewska-Dawid
General
Nextflow
Workflows
Data management
Data visualization
Unix/Linux
ATAC-seq
Comparative genomics
Epigenetics
Genome annotation
Genome assembly
Metagenomics
RNA-seq
Transcriptomics
Variant analysis
Days since last push
63
License
mit
A :book: on data wrangling, exploration, & analysis with R - created by Jenny Bryan, made with bookdown
Contributors
Alison Presmanes Hill
Jennifer (Jenny) Bryan
Grace Lawley
R
Statistics
Data visualization
Data management
Days since last push
931
License
other
127
OBO Organized Knowledge: Training materials for becoming an OBO engineer
cc0-1.0
Contributors
Nicole Vasilevsky
Nico Matentzoglu
Shawn Tan
Sarah Gehrke
Valentina Cipriani
Data management
Ontology
Knowledge graph
Version control
FAIR data
GNU Make
SPARQL
Days since last push
21
License
cc0-1.0
ELIXIR Research Data Management Toolkit - Find the answers to your research data management questions here.
Contributors
Bert Droesbeke
floradanna
Korbinian Bösl
Munazah
Federico Bianchini
Data management
FAIR data
Days since last push
0
License
other
Melbourne Bioinformatics documentation in markdown format
Contributors
Vini Salazar
Vicky Perreau
Clare Sloggett
Simon Gladman
Anna Syme
General
Unix/Linux
Data management
Transcriptomics
RNA-seq
Genomics
Version control
Days since last push
58
License
-
NBIS/Elixir course: Tools for Reproducible Research
cc-by-4.0
Contributors
John Sundh
Erik Fasterius
Leif Väremo
Rasmus Ågren
Verena Kutschera
Reproducibility
Data management
Days since last push
10
License
cc-by-4.0
Data Management with SQL for Ecologists
Contributors
Christina K.
Ethan White
Tracy Teal
Paula Andrea Martinez
Aleksandra Pawlik
Data management
SQL
Days since last push
3
License
other
Opensciency - A core open science curriculum by and for the research community.
Contributors
Chris Erdmann
Esther Plomp
andreamedinasmith
Malvika Sharan
Hugh Shanahan
Data management
FAIR data
Days since last push
981
License
other
Data Organization in Spreadsheets for Ecologists
Contributors
Tracy Teal
Erin Becker
Aleksandra Pawlik
Pete
Laurent Gatto
Data management
Data science
Days since last push
3
License
other
Project Organization and Management for Genomics
Contributors
Pete
Amanda Charbonneau
Debbie Paul
Tracy Teal
Erin Becker
Genomics
Next generation sequencing
Data management
Days since last push
3
License
other
Good Enough Practices in Scientific Computing
Contributors
Edward Wallace
Tomasz Zielinski
Allen Lee
Emma Wilson
Zhian N. Kamvar
Reproducibility
Data management
Version control
Days since last push
2
License
other
Good Enough Practices in Scientific Computing
Contributors
Edward Wallace
Tomasz Zielinski
Allen Lee
Emma Wilson
Zhian N. Kamvar
Data management
Reproducibility
Days since last push
2
License
other
Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)
Contributors
Mark Fernandes
Mark Dunning
Anne Pajon
AshKernow
Abigail Edwards
Data management
Days since last push
1248
License
other
Contributors
Robert Haase
Mara Lampert
Yixin Huang
Lea Gihlein
Riccardo Massei
Data management
FAIR data
Image analysis
Days since last push
0
License
cc-by-4.0
Home Repository for the CfRR website
Contributors
Liam Berrisford
Craig R. G. Willis
Dr. Chris Tibbs
Michael Saunby
Thomas Hawes
Reproducibility
R
Python
Unix/Linux
Data management
Days since last push
0
License
-
Repository for the Data Privacy Handbook @UtrechtUniversity, a practical guide on handling personal data in scientific research
Contributors
Dorien Huijser
Neha Moopen
hackmd-deploy
kleuveld
Erik-Jan van Kesteren
Data management
Days since last push
513
License
other
Managing Open and Reproducible Computational Projects
Contributors
Malvika Sharan
Julien Colomb
Lydia France
Jo Havemann
Zhian N. Kamvar
Reproducibility
FAIR data
Data management
Days since last push
619
License
other
This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
Contributors
A. Morgat
Jerven Bolleman
lynma01
SPARQL
Data management
Days since last push
2
License
-
Formation continue sur la FAIRisation du code informatique
agpl-3.0
Contributors
Thomas Denecker
Helene Chiapello
Celine Hernandez
Alexandra Louis
Jacques van Helden
FAIR data
Data management
Days since last push
1569
License
agpl-3.0
Ready for BioData Management? is a capacity-building program in data management for the life sciences to empower researchers and institutions in managing their data more effectively and efficiently.
Contributors
Daniel Faria
Thejmfc
BioData.pt Admin
Gil Poiares-Oliveira
Data management
Days since last push
234
License
other
FAIR in (biological) practice
Contributors
Tomasz Zielinski
aromanowski
Ines Boehm
zajawka
livia-scorza
FAIR data
Reproducibility
Data management
Days since last push
2
License
other
This course introduces more advanced tools to increase the reproducibility of data analyses; building upon the Intro to Reproducibility course. GitHub, Docker, Code Review, and GitHub actions are discussed.
cc-by-4.0
Contributors
Candace Savonen
jhudsl-robot
actions-user
Carrie Wright
Kate Isaac
Data management
Reproducibility
Version control
Docker
Days since last push
0
License
cc-by-4.0
Contributors
penyuan
James Thomas
Reproducibility
FAIR data
Data management
Days since last push
258
License
cc-by-sa-4.0
Contributors
Tracy Teal
Isabel Zimmerman
Data management
General
Days since last push
1109
License
-
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