Is your (favourite) course not in there? Is a link dead? Did you find a typo?
Any contribution to this list is highly appreciated!
Selected topics (1)
38 Repositories
Page 1 / 2
Repository
Owner
Contributors
Topics
Stargazers
Days since last push
a curated list of R tutorials for Data Science, NLP and Machine Learning
mit
Contributors
Ujjwal Karn
General
R
Machine learning
Days since last push
1301
License
mit
Contributors
Tim Sackton
Ming Tang
Lynn Langit
Simon Cockell
Nathan Weeks
General
Days since last push
631
License
mit
Unix, R and python tools for genomics and data science
Contributors
Ming Tang
Harshil Patel
Albert Vilella
Jirka Lhotka
Shixiang Wang (王诗翔)
General
Days since last push
403
License
-
A list of interesting genome browser and genome visualization programs
mit
Contributors
Colin Diesh
Kari Lavikka
Nathan Dunn
Sam Sims
SEHI L'YI
Data visualization
Genomics
General
Days since last push
73
License
mit
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Contributors
tarachari3
Meichen Fang
Lior Pachter
Zitong Jerry Wang
Laura Luebbert, Ph.D.
General
Statistics
Next generation sequencing
Genomics
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
261
License
other
A collection of data science and machine learning resources that I've found helpful (I only post what I've read!)
Contributors
Bradley Boehmke
General
Data science
Machine learning
Days since last push
815
License
-
A guided, intuitive introduction to genomics for software engineers. Curated by the community.
Contributors
Clay McLeod
Gavrie Philipson
Dave
PerezTheDev
Precision Infinity
General
Genomics
Next generation sequencing
Variant analysis
Days since last push
235
License
other
Materials for short, half-day workshops
Contributors
marypiper
Will Gammerdinger
Radhika Khetani
Meeta Mistry
eberdan
General
Python
R
Rmarkdown
Unix/Linux
Version control
Enrichment analysis
FAIR data
Data visualization
Variant analysis
RNA-seq
Transcriptomics
Days since last push
71
License
other
Contributors
Helena
Saskia Hiltemann
Bérénice Batut
Björn Grüning
Wendi Bacon
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Workshops presented by the Gladstone Bioinformatics Core
Contributors
Natalie Gill
Ayushi Agrawal
reubenthomas
Kristina Hanspers
MichelaTr
General
R
Version control
Genomics
Transcriptomics
Single-cell sequencing
RNA-seq
Pathways and Networks
Data visualization
Statistics
ATAC-seq
Machine learning
Unix/Linux
Days since last push
9
License
-
Contributors
Rick Masonbrink
Arun Seetharam
Andrew Severin
Siva Chudalayandi
Aleksandra E. Badaczewska-Dawid
General
Nextflow
Workflows
Data management
Data visualization
Unix/Linux
ATAC-seq
Comparative genomics
Epigenetics
Genome annotation
Genome assembly
Metagenomics
RNA-seq
Transcriptomics
Variant analysis
Days since last push
63
License
mit
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
mit
Contributors
Ronan Harrington
General
Days since last push
2149
License
mit
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
apache-2.0
Contributors
Salvatore Raieli
General
Machine learning
Days since last push
348
License
apache-2.0
A collection of resources for learning about tools and programming languages related to Bioinformatics
Contributors
BioinformaNicks
heyyyjude
General
Days since last push
1534
License
-
Melbourne Bioinformatics documentation in markdown format
Contributors
Vini Salazar
Vicky Perreau
Clare Sloggett
Simon Gladman
Anna Syme
General
Unix/Linux
Data management
Transcriptomics
RNA-seq
Genomics
Version control
Days since last push
59
License
-
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
mit
Contributors
Jack Kang
liulab-dfci
Gali Bai
Ming Tang
Ninad P.Chaudhari
General
Next generation sequencing
Transcriptomics
Genomics
ATAC-seq
ChIP-seq
Epigenetics
Single-cell sequencing
Variant analysis
Days since last push
1640
License
mit
A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
Contributors
Joshua Shapiro
Stephanie J. Spielman
Jaclyn Taroni
Ally Hawkins
Candace Savonen
General
Transcriptomics
RNA-seq
Single-cell sequencing
R
Pathways and Networks
Days since last push
1
License
other
Contributors
Liliane Conteville
Ana Julia Velez Rueda
Franco Leonardo Bulgarelli
ivanafeldfeber
General
Version control
Unix/Linux
Python
Days since last push
1316
License
cc0-1.0
Contributors
Melissa
angelat1020
Elizabeth Hutchins
sbplaisier
General
Days since last push
1626
License
gpl-3.0
Lecture notes/book in progress on computing for conservation genomics
mit
Contributors
Eric C. Anderson
Shyam Saladi
General
Unix/Linux
Version control
R
Genomics
Variant analysis
Genome assembly
Days since last push
977
License
mit
Site to help biologists wade their way into bioinformatics.
Contributors
Mike Lee
Marcus Fedarko
Luiz Irber
C. Titus Brown
General
R
Unix/Linux
Genomics
Days since last push
177
License
other
Contributors
Michael Love
General
Days since last push
16
License
mit
Materials for the Training and Engagement Website
Contributors
Marisa Lim
Rayna M Harris
Abhijna Parigi
Jeremy Walter
Saranya Canchi
General
Cloud computing
RNA-seq
Python
Unix/Linux
Snakemake
Days since last push
993
License
other
Bioinformatics course (WSBIM1322)
Contributors
Laurent Gatto
General
Statistics
Machine learning
R
Days since last push
185
License
-
Collaborative Lesson Development Training curriculum
Contributors
Toby Hodges
Aleksandra Nenadic
Sarah Stevens
Erin Becker
Mateusz Kuzak
General
Days since last push
3
License
other
Topics