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14 Repositories

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This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
Contributors
Andrew Jahn Andrew Jahn
Dan Levitas Dan Levitas
Yaroslav Halchenko Yaroslav Halchenko
Eric Holscher Eric Holscher
John T. Johnson John T. Johnson
+ 9 more
Image analysis Unix/Linux
Days since last push
0
License
cc0-1.0
Image Processing with Python
Contributors
Toby Hodges Toby Hodges
Ulf Schiller Ulf Schiller
Mark Meysenburg Mark Meysenburg
Dominik Kutra Dominik Kutra
David Palmquist David Palmquist
+ 34 more
Image analysis
Days since last push
1
License
other
Resources for teaching/preparing to teach bioimage analysis
Contributors
Christian Tischer Christian Tischer
Antonio Politi Antonio Politi
Toby Hodges Toby Hodges
arif ul maula khan arif ul maula khan
bugraoezdemir bugraoezdemir
+ 24 more
Image analysis
Days since last push
6
License
other
Contributors
Rasool Saghaleyni Rasool Saghaleyni
Geert van Geest Geert van Geest
Francesca Drummer Francesca Drummer
geogav geogav
Mark Robinson Mark Robinson
+ 4 more
Spatial transcriptomics Transcriptomics Image analysis
Days since last push
574
License
cc-by-4.0
fMRI Imaging Analysis
Contributors
Jerry Jeyachandra Jerry Jeyachandra
Michael Joseph Michael Joseph
Jon Haitz Legarreta Gorroño Jon Haitz Legarreta Gorroño
Toby Hodges Toby Hodges
Mike Schmidt Mike Schmidt
+ 3 more
Image analysis
Days since last push
1
License
other
Structural Neuroimaging Analysis in Python
Contributors
Nikhil Bhagwat Nikhil Bhagwat
Swapna Premasiri Swapna Premasiri
Jon Haitz Legarreta Gorroño Jon Haitz Legarreta Gorroño
Michael Michael
Jean-Baptiste Poline Jean-Baptiste Poline
+ 1 more
Image analysis
Days since last push
1
License
other
Introduction to MRI and BIDS
Contributors
Michael Joseph Michael Joseph
Jon Haitz Legarreta Gorroño Jon Haitz Legarreta Gorroño
Erin W Dickie Erin W Dickie
Toby Hodges Toby Hodges
tigrlab-bot tigrlab-bot
+ 3 more
Image analysis
Days since last push
1
License
other
Contributors
Jon Haitz Legarreta Gorroño Jon Haitz Legarreta Gorroño
Michael Joseph Michael Joseph
Jason Kai Jason Kai
Toby Hodges Toby Hodges
ostanley ostanley
+ 3 more
Image analysis
Days since last push
1
License
other
Contributors
Robert Haase Robert Haase
Mara Lampert Mara Lampert
Yixin Huang Yixin Huang
Lea Gihlein Lea Gihlein
Clement Caporal Clement Caporal
+ 8 more
Data management FAIR data Image analysis
Days since last push
0
License
cc-by-4.0
Introduction to Spatial Transcriptomics Data Analysis
Contributors
Deepak Tanwar Deepak Tanwar
Julien Roux Julien Roux
Jcarlevaro Jcarlevaro
Martin Emons Martin Emons
Peiying Cai Peiying Cai
+ 4 more
Spatial transcriptomics Image analysis Data visualization RNA-seq Transcriptomics
Days since last push
142
License
cc-by-4.0
A template for napari workshops
Contributors
Melissa Weber Mendonça Melissa Weber Mendonça
Peter Sobolewski Peter Sobolewski
Guillaume Witz Guillaume Witz
Juan Nunez-Iglesias Juan Nunez-Iglesias
chili-chiu chili-chiu
+ 5 more
Image analysis
Days since last push
306
License
bsd-3-clause
workshop materials for performing cell segmentation in napari
Contributors
Tom di Mino Tom di Mino
dgmccart dgmccart
Nadalyn-CZI Nadalyn-CZI
Justin Kiggins, PhD Justin Kiggins, PhD
bnelson-czi bnelson-czi
+ 2 more
Image analysis
Days since last push
1264
License
mit
GBI/ELIXIR/EuBI/NEUBIAS hackathon model case
Contributors
Dominic Waithe Dominic Waithe
Image analysis Python
Days since last push
3060
License
-
napari workshop from the Microscopy and Microanalysis 2023 conference
Contributors
Kasia Kedziora Kasia Kedziora
Kyle I S Harrington Kyle I S Harrington
Image analysis
Days since last push
1199
License
bsd-3-clause

About

Glittr.org is a curated list of educational material for the computational life sciences.

All material is:

  • In a GitHub or GitLab repository
  • Free to use
  • Written in markdown or similar

If you want to cite or know more about Glittr.org, check out our paper in PLOS ONE!

NOTE: This list of courses is selected only based on the above criteria.
There are no checks on quality. In case there is no license associated with the repository, copyright belongs to the author, and you cannot copy or modify it for any reason other than personal use.

Terms of use

Developed, maintained and curated by:
Geert van Geest
Patricia Palagi
Yann Haefliger

Data last updated: 2026-11-04 01:19:13

Swiss Institute of Bioinformatics

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