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26 Repositories

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oscarbaruffa/BigBookofR
591
The biggest collection of R books (and maybe later some other resources too)
Repository Website
Owner
Oscar Baruffa
Profile
Contributors
Oscar Baruffa Oscar Baruffa
Eric Leung Eric Leung
Matt Roumaya Matt Roumaya
Bryan Shalloway Bryan Shalloway
Maëlle Salmon Maëlle Salmon
+ 39 more
R Data science Data visualization Machine learning Statistics Version control Workflows
Days since last push
184
License
-
Details
nextflow-io/training
276
Nextflow training material
Repository Website
Owner
Seqera
Profile Website
Contributors
Marcel Ribeiro-Dantas Marcel Ribeiro-Dantas
Chris Hakkaart Chris Hakkaart
Chris Wyatt Chris Wyatt
Phil Ewels Phil Ewels
Jonathan Manning Jonathan Manning
+ 62 more
Workflows Nextflow
Days since last push
7
License
other
Details
ISUgenomics/bioinformatics-workbook
212
Bioinformatics Workbook repository
Repository Website
Owner
Genome Informatics Facility
Profile Website
Contributors
Rick Masonbrink Rick Masonbrink
Arun Seetharam Arun Seetharam
Andrew Severin Andrew Severin
Siva Chudalayandi Siva Chudalayandi
Aleksandra E. Badaczewska-Dawid Aleksandra E. Badaczewska-Dawid
+ 12 more
General Nextflow Workflows Data management Data visualization Unix/Linux ATAC-seq Comparative genomics Epigenetics Genome annotation Genome assembly Metagenomics RNA-seq Transcriptomics Variant analysis
Days since last push
88
License
mit
Details
burkesquires/python_biologist
157
Python Programming for Biologists
Repository
Owner
R. Burke Squires
Profile Website
Contributors
R. Burke Squires R. Burke Squires
Python Machine learning Data visualization Workflows Snakemake Reproducibility
Days since last push
264
License
-
Details
b-rodrigues/rap4all
112
Repository Website
Owner
Bruno Rodrigues
Profile Website
Contributors
Bruno Rodrigues Bruno Rodrigues
Matan Hakim Matan Hakim
Sébastien Rochette Sébastien Rochette
a-s-russo a-s-russo
JakeTufts JakeTufts
+ 10 more
R Workflows
Days since last push
439
License
other
Details
carpentries-incubator/workflows-nextflow
32
Workflow management with Nextflow and nf-core
Repository Website
Owner
The Carpentries Incubator
Profile Website
Contributors
Graeme Grimes Graeme Grimes
Mahesh Binzer-Panchal Mahesh Binzer-Panchal
Robert (Bob) Turner Robert (Bob) Turner
Nurlan Kerimov Nurlan Kerimov
Erik Fasterius Erik Fasterius
+ 8 more
Workflows Nextflow
Days since last push
644
License
other
Details
carpentries-incubator/snakemake-novice-bioinformatics
22
Introduction to Snakemake for Bioinformatics
Repository Website
Owner
The Carpentries Incubator
Profile Website
Contributors
Tim Booth Tim Booth
Lex Nederbragt Lex Nederbragt
Ezra Herman Ezra Herman
John Blischak John Blischak
Edward Wallace Edward Wallace
+ 2 more
Workflows Snakemake
Days since last push
0
License
other
Details
vib-training-conferences/nextflow-reproducible-data-analysis
20
Nextflow workshop materials November 2025
Repository Website
Owner
VIB Training & Conferences
Profile Website
Contributors
Kobe Lavaerts Kobe Lavaerts
Tuur Muyldermans Tuur Muyldermans
Nicolas Vannieuwkerke Nicolas Vannieuwkerke
Alexander Alexander
Kris Davie Kris Davie
+ 4 more
Workflows Nextflow
Days since last push
73
License
other
Details
sib-swiss/containers-snakemake-training
14
Course website "Introduction to Containers and Snakemake for Reproducible Research"
Repository Website
Owner
SIB Swiss Institute of Bioinformatics
Profile Website
Contributors
Antonin Thiébaut Antonin Thiébaut
Geert van Geest Geert van Geest
rriupu rriupu
Workflows Containerization Snakemake Singularity Docker
Days since last push
104
License
cc-by-4.0
Details
carpentries-incubator/cwl-novice-tutorial
11
Introduction to Workflows with Common Workflow Language
Repository Website
Owner
The Carpentries Incubator
Profile Website
Contributors
Raniere Silva Raniere Silva
François Michonneau François Michonneau
Greg Wilson Greg Wilson
Maxim Belkin Maxim Belkin
Michael R. Crusoe Michael R. Crusoe
+ 59 more
Workflows CWL Containerization
Days since last push
923
License
other
Details
carpentries-incubator/workflows-snakemake
8
One-day Snakemake workshop.
Repository Website
Owner
The Carpentries Incubator
Profile Website
Contributors
DC23 DC23
Raniere Silva Raniere Silva
Greg Wilson Greg Wilson
François Michonneau François Michonneau
Jeff Stafford Jeff Stafford
+ 34 more
Workflows Snakemake
Days since last push
1147
License
other
Details
biocorecrg/CoursesCRG_Containers_Nextflow_May_2022
7
Slow-paced containers and Nextflow course for beginners.
Repository Website
Owner
Biocore@CRG
Profile Website
Contributors
Toni Hermoso Pulido Toni Hermoso Pulido
Jose Espinosa-Carrasco Jose Espinosa-Carrasco
Luca Cozzuto Luca Cozzuto
Workflows Nextflow
Days since last push
1603
License
-
Details
BovReg/nf-workshop20
7
BovReg Nextflow workshop and hackathon organized by the CRG on 17-20 November 2020
Repository
Owner
BovReg
Profile Website
Contributors
Jose Espinosa-Carrasco Jose Espinosa-Carrasco
Workflows Nextflow
Days since last push
1014
License
apache-2.0
Details
sateeshperi/nextflow_varcal
6
Nextflow Tutorial - Variant Calling Edition
Repository Website
Owner
Sateesh_Peri
Profile Website
Contributors
Sateesh_Peri Sateesh_Peri
Workflows Nextflow Variant analysis
Days since last push
982
License
-
Details
biocorecrg/ELIXIR_containers_nextflow
5
ELIXIR VIB-CRG courses on containers (Docker + Singularity) and Nextflow.
Repository Website
Owner
Biocore@CRG
Profile Website
Contributors
Toni Hermoso Pulido Toni Hermoso Pulido
Julia Ponomarenko Julia Ponomarenko
Luca Cozzuto Luca Cozzuto
Sarah Bonnin Sarah Bonnin
Tuur Muyldermans Tuur Muyldermans
+ 1 more
Workflows Nextflow
Days since last push
1831
License
-
Details
RomainFeron/workshop-snakemake-sibdays2022
4
Repository for the workshop "Introduction to Snakemake" @ SIB-Days 2022
Repository
Owner
Romain Feron
Profile
Contributors
Romain Feron Romain Feron
Amina Echchiki Amina Echchiki
Jon Fuller Jon Fuller
Workflows Snakemake
Days since last push
1595
License
gpl-3.0
Details
biocorecrg/SIB_course_nextflow_Nov_2021
3
Nextflow course 2021
Repository Website
Owner
Biocore@CRG
Profile Website
Contributors
Luca Cozzuto Luca Cozzuto
Julia Ponomarenko Julia Ponomarenko
Toni Hermoso Pulido Toni Hermoso Pulido
Diana Marek Diana Marek
Workflows Nextflow
Days since last push
1784
License
-
Details
dockstore/bcc2020-training
2
Training materials for our BCC 2020 training workshop.
Repository
Owner
Dockstore
Profile Website
Contributors
Andrew Duncan Andrew Duncan
Louise Cabansay Louise Cabansay
NatalieEO NatalieEO
Noah Warren Noah Warren
Steve Von Worley Steve Von Worley
+ 2 more
Workflows Containerization Reproducibility
Days since last push
808
License
-
Details
BiodataAnalysisGroup/intro-to-cwl-docker
1
Introduction to CWL and Docker
Repository Website
Owner
Biodata Analysis Group
Profile Website
Contributors
Nikos Pechlivanis Nikos Pechlivanis
Fotis E. Psomopoulos Fotis E. Psomopoulos
Konstantinos Kyritsis Konstantinos Kyritsis
Kostis Zagganas Kostis Zagganas
Thanasis Vergoulis Thanasis Vergoulis
Workflows CWL Containerization Docker
Days since last push
1787
License
-
Details
fhdsl/GitHub_Automation_for_Scientists
1
This course walks through why's and the how's for using automation to boost scientific software development process.
Repository Website
Owner
Fred Hutch Data Science Lab
Profile Website
Contributors
Candace Savonen Candace Savonen
jhudsl-robot jhudsl-robot
Kate Isaac Kate Isaac
Jake Crawford Jake Crawford
Howard Baik Howard Baik
+ 1 more
Workflows Reproducibility Version control
Days since last push
21
License
cc-by-4.0
Details
Sydney-Informatics-Hub/customising-nfcore-workshop
Repository Website
Owner
Sydney Informatics Hub
Profile Website
Contributors
Georgie Samaha Georgie Samaha
Chris Hakkaart Chris Hakkaart
calizilla calizilla
Gordon McDonald Gordon McDonald
Nextflow Workflows
Days since last push
1208
License
mit
Details
bioinformatics-core-shared-training/nextflow_september_2021
Repository
Owner
CRUK CI Bioinformatics Core shared training
Profile Website
Contributors
Matt Eldridge Matt Eldridge
Richard Bowers Richard Bowers
Workflows Nextflow
Days since last push
1839
License
mit
Details
rworkflow/RcwlWorkshop
Repository Website
Owner
Workflow Languages in R
Profile
Contributors
Sean Davis Sean Davis
Qian Liu Qian Liu
qhu qhu
Aedin Culhane Aedin Culhane
Levi Waldron Levi Waldron
+ 4 more
R CWL Workflows Variant analysis
Days since last push
1183
License
other
Details
BioNT-Training/hpc-workflows-en
Repository Website
Owner
BioNT Training
Profile Website
Contributors
ocaisa ocaisa
Andrew Reid Andrew Reid
Renato Alves Renato Alves
Trevor Keller Trevor Keller
Toby Hodges Toby Hodges
Snakemake Workflows High performance computing
Days since last push
98
License
other
Details
jeffe107/nextflow-training
Course website "Nextflow in Action Build Smarter, Faster, Reproducible Pipelines"
Repository Website
Owner
Jeferyd Yepes G
Profile Website
Contributors
Jeferyd Yepes G Jeferyd Yepes G
Nextflow Workflows
Days since last push
212
License
cc-by-4.0
Details

About

Glittr.org is a curated list of educational material for the computational life sciences.

All material is:

  • In a GitHub or GitLab repository
  • Free to use
  • Written in markdown or similar

If you want to cite or know more about Glittr.org, check out our paper in PLOS ONE!

NOTE: This list of courses is selected only based on the above criteria.
There are no checks on quality. In case there is no license associated with the repository, copyright belongs to the author, and you cannot copy or modify it for any reason other than personal use.

Terms of use

Code for this application is available on our github.

Developed, maintained and curated by:
Geert van Geest
Patricia Palagi
Yann Haefliger

Data last updated: 2026-10-27 13:19:39

Swiss Institute of Bioinformatics

Initiative of the the SIB Training Group.
Interested in SIB courses? Visit our website.

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