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21 Repositories
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Repository
Owner
Contributors
Topics
Stargazers
Days since last push
Data Engineering Zoomcamp is a free 9-week course on building production-ready data pipelines. Join the course here 👇🏼
Contributors
Alexey Grigorev
Victoria Perez Mola
SV
ankushkhanna
Will Russell
Data science
Containerization
Docker
Days since last push
16
License
-
A Tutorial for Setting Python Development Environment with VScode and Docker
Contributors
Rami Krispin
Luke
Tarique
Python
Containerization
Docker
Days since last push
972
License
-
A Tutorial for Setting R Development Environment with VScode, Dev Containers, and Docker
Contributors
Rami Krispin
Jared Lander
Alban Ott
Burak Kutlu
R
Containerization
Docker
Days since last push
795
License
-
A docker tutorial for reproducible research
Contributors
Tiffany A. Timbers
Jemma Stachelek
Katie Anne Mills
Laura Melissa Guzman
Daniel Emaasit
R
Containerization
Docker
Days since last push
1702
License
-
(WIP) Getting started with Docker - An introduction to Docker with data science and engineering applications
Contributors
Rami Krispin
Containerization
Docker
Days since last push
1108
License
-
Contributors
Alexandru Mahmoud
bioc-docker-bot
Nitesh Turaga
Sean Davis
Marcel Ramos Pérez
R
Containerization
Docker
Days since last push
3
License
artistic-2.0
Reproducible Computational Environments using Containers
Contributors
Raniere Silva
François Michonneau
Greg Wilson
Sarah Stevens
Christina K.
Containerization
Docker
Days since last push
2
License
other
Course website "Docker and Singularity for reproducible research: getting started with containers"
cc-by-4.0
Contributors
Geert van Geest
Antonin Thiébaut
Yann Haefliger
Jcarlevaro
rriupu
Containerization
Docker
Singularity
Days since last push
111
License
cc-by-4.0
An introduction to singularity
Contributors
Raniere Silva
François Michonneau
Greg Wilson
Maxim Belkin
Jeremy Cohen
Containerization
Singularity
Days since last push
668
License
other
Course website "Introduction to Containers and Snakemake for Reproducible Research"
cc-by-4.0
Contributors
Antonin Thiébaut
Geert van Geest
rriupu
Workflows
Containerization
Snakemake
Singularity
Docker
Days since last push
78
License
cc-by-4.0
Introduction to Workflows with Common Workflow Language
Contributors
Raniere Silva
François Michonneau
Greg Wilson
Maxim Belkin
Michael R. Crusoe
Workflows
CWL
Containerization
Days since last push
897
License
other
Démonstration d’outils de bioinfo dans le cadre d’un projet
Contributors
Thomas Denecker
clairetn
General
Reproducibility
Containerization
Snakemake
Next generation sequencing
Transcriptomics
RNA-seq
Days since last push
1904
License
other
Material for the ELIXIR EXCELERATE workshop "Using clouds and VMs in bioinformatics training"
Contributors
Eija Korpelainen
Christophe Blanchet
Pedro L Fernandes
Abdulrahman Azab
Nicolas Delhomme
Cloud computing
Containerization
Docker
Days since last push
3552
License
-
Contributors
Rika Gorn
Mine Cetinkaya-Rundel
Tom Mock
Version control
Containerization
Docker
Days since last push
780
License
cc-by-sa-4.0
Materials for the workshop on containers
cc-by-4.0
Contributors
Alexander
Bruna Piereck
Alexander Botzki
Tuur Muyldermans
Containerization
Docker
Singularity
Days since last push
45
License
cc-by-4.0
https://permedcoe.github.io/mpi-in-container
Contributors
Henrik Nortamo
Containerization
Docker
Singularity
High performance computing
Days since last push
1717
License
other
Introduction to using Docker and Singularity containers in CMS(SW)
Contributors
Kevin Pedro
Clemens Lange
Containerization
Docker
Singularity
Days since last push
436
License
other
Training materials for our BCC 2020 training workshop.
Contributors
Andrew Duncan
Louise Cabansay
NatalieEO
Noah Warren
Steve Von Worley
Workflows
Containerization
Reproducibility
Days since last push
783
License
-
Contributors
Mark Fernandes
Alexander
Alexander Botzki
penyuan
naeemmuhammad
Reproducibility
Containerization
Python
Days since last push
25
License
other
Contributors
Edmund Miller
Salehkarim21
muneeryaqub
hxf190002
syamauchi2000
Genomics
High performance computing
Nextflow
Reproducibility
Containerization
Version control
Singularity
Epigenetics
ChIP-seq
Unix/Linux
RNA-seq
Variant analysis
Julia
Days since last push
907
License
-
Introduction to CWL and Docker
Contributors
Nikos Pechlivanis
Fotis E. Psomopoulos
Konstantinos Kyritsis
Kostis Zagganas
Thanasis Vergoulis
Workflows
CWL
Containerization
Docker
Days since last push
1761
License
-
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