Selected topics (1)

18 Repositories

Page 1 / 1
galaxyproject/training-material
366
A collection of Galaxy-related training material
Repository Website
Owner
Galaxy Project
Profile Website
Contributors
Helena Helena
Saskia Hiltemann Saskia Hiltemann
Bérénice Batut Bérénice Batut
Björn Grüning Björn Grüning
Wendi Bacon Wendi Bacon
+ 278 more
Galaxy General Genomics Next generation sequencing Transcriptomics RNA-seq Single-cell sequencing Variant analysis ATAC-seq Comparative genomics ChIP-seq Epigenetics Genome annotation Genome assembly Metagenomics Microbiology Long read sequencing Metabolomics Proteomics Data management FAIR data Reproducibility Data science Statistics Machine learning Snakemake R Python Unix/Linux Version control
Days since last push
0
License
mit
Details
microbiome/OMA
111
Orchestrating Microbiome Analysis
Repository Website
Owner
microbiome
Profile Website
Contributors
Tuomas Borman Tuomas Borman
Leo Lahti Leo Lahti
Giulio Benedetti Giulio Benedetti
Felix Ernst Felix Ernst
Artur Sannikov Artur Sannikov
+ 31 more
Metagenomics Microbiology Multiomics R
Days since last push
3
License
-
Details
biotrain-latam/BiotrAIn-pilot-course
15
BiotrAIn course: specialised training is designed for students, researchers, and professionals in biological sciences from Latin America who are interested in leveraging Artificial Intelligence (AI) for bioscience applications.
Repository Website
Owner
BiotrAIn
Profile Website
Contributors
BiotrAIn BiotrAIn
Nelly Sélem Nelly Sélem
josemolina6 josemolina6
daniel5Ce98 daniel5Ce98
Daniel Farfán Daniel Farfán
+ 5 more
Artificial intelligence R Python Genomics Microbiology Machine learning Ontology Next generation sequencing
Days since last push
469
License
-
Details
sib-swiss/metagenomics-data-analysis-training
7
Training material for the workshop Metagenomics data analysis of mixed microbial communities
Repository Website
Owner
SIB Swiss Institute of Bioinformatics
Profile Website
Contributors
Jeferyd Yepes G Jeferyd Yepes G
Metagenomics Genomics Next generation sequencing Microbiology
Days since last push
497
License
gpl-3.0
Details
BU-ISCIII/bacterial_wgs_training
4
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
Repository
Owner
BU-ISCIII
Profile
Contributors
Sara Monzón Sara Monzón
Sarai Varona Sarai Varona
MiguelJulia MiguelJulia
Pedro J. Sola Pedro J. Sola
Isabel Cuesta Isabel Cuesta
+ 1 more
Next generation sequencing Microbiology Nextflow Singularity Unix/Linux Genome assembly Genome annotation Variant analysis
Days since last push
700
License
gpl-3.0
Details
BU-ISCIII/virology_training
4
This repo contains all the resources needed to follow the virology training to analyze viral sequencing data.
Repository
Owner
BU-ISCIII
Profile
Contributors
Sarai Varona Sarai Varona
Sara Monzón Sara Monzón
Isabel Cuesta Isabel Cuesta
MiguelJulia MiguelJulia
Víctor López Víctor López
Galaxy Next generation sequencing Microbiology
Days since last push
189
License
-
Details
bioinformatics-ca/MIC_2021
2
Repository
Owner
Canadian Bioinformatics Workshops
Profile Website
Contributors
Ana Popovic Ana Popovic
Canadian Bioinformatics Workshops Canadian Bioinformatics Workshops
Zohaib Anwar Zohaib Anwar
Diana Diana
Jacob T. Nearing Jacob T. Nearing
+ 2 more
Metagenomics Microbiology
Days since last push
913
License
-
Details
nour0810/Antibiotic-Learning-Laboratory
1
🧬 Interactive e-learning platform for antibiotic resistance & microbiology — built for microbiologists, biotechnologists & biomedical science students
Repository Website
Owner
nour0810
Profile
Contributors
nour0810 nour0810
Microbiology
Days since last push
168
License
-
Details
mcalgaro93/benchdamicWorkshop
1
benchdamic's workshop
Repository
Owner
Matteo Calgaro
Profile
Contributors
Matteo Calgaro Matteo Calgaro
Metagenomics Microbiology
Days since last push
437
License
other
Details
bioinformaticsdotca/MIC_2023
Repository
Owner
bioinformatics.ca
Profile Website
Contributors
kevmu kevmu
Canadian Bioinformatics Workshops Canadian Bioinformatics Workshops
Robyn Wright Robyn Wright
Heather Gibling Heather Gibling
Ryan Chieu Ryan Chieu
+ 2 more
Metagenomics Microbiology
Days since last push
913
License
-
Details
bioinformaticsdotca/MIC_2022
Repository
Owner
bioinformatics.ca
Profile Website
Contributors
zhibinlu zhibinlu
Ana Popovic Ana Popovic
William Hsiao William Hsiao
Irina Utkina Irina Utkina
Diana Diana
+ 1 more
Metagenomics Microbiology
Days since last push
1394
License
-
Details
BU-ISCIII/cna_bacterial_wgs_training
In this training course you will find theory and practice material for introducing yourself to wgs analysis for foodborne bacteria
Repository
Owner
BU-ISCIII
Profile
Contributors
Sarai Varona Sarai Varona
Isabel Cuesta Isabel Cuesta
Sara Monzón Sara Monzón
Microbiology Next generation sequencing Galaxy Genome assembly Genome annotation Variant analysis Epidemiology
Days since last push
1423
License
-
Details
BU-ISCIII/galaxy_virologist_training
Galaxy training for virology profiles
Repository
Owner
BU-ISCIII
Profile
Contributors
Sarai Varona Sarai Varona
Sara Monzón Sara Monzón
Isabel Cuesta Isabel Cuesta
GuilleGorines GuilleGorines
Víctor López Víctor López
Microbiology Epidemiology Next generation sequencing Genome annotation
Days since last push
330
License
-
Details
bioinformaticsdotca/AMB_2025
Repository
Owner
bioinformatics.ca
Profile Website
Contributors
Canadian Bioinformatics Workshops Canadian Bioinformatics Workshops
Tony Liu Tony Liu
Ryan Ryan
Robyn Wright Robyn Wright
Microbiology Metagenomics
Days since last push
422
License
-
Details
bioinformaticsdotca/BMB_2025
Repository
Owner
bioinformatics.ca
Profile Website
Contributors
Robyn Wright Robyn Wright
Canadian Bioinformatics Workshops Canadian Bioinformatics Workshops
Ryan Ryan
Microbiology Metagenomics
Days since last push
329
License
-
Details
bioinformaticsdotca/MIG_2025
Virtual Microbial Genomics Workshop
Repository
Owner
bioinformatics.ca
Profile Website
Contributors
rbeiko rbeiko
Jimmy Liu Jimmy Liu
Andrew G. McArthur Andrew G. McArthur
Canadian Bioinformatics Workshops Canadian Bioinformatics Workshops
Neha Ratti Neha Ratti
Microbiology Metagenomics Next generation sequencing
Days since last push
294
License
-
Details
bioinformaticsdotca/BMB_2024
Repository
Owner
bioinformatics.ca
Profile Website
Contributors
Canadian Bioinformatics Workshops Canadian Bioinformatics Workshops
Robyn Wright Robyn Wright
Monica Alvaro Fuss Monica Alvaro Fuss
zhibinlu zhibinlu
Microbiology Metagenomics Next generation sequencing
Days since last push
853
License
-
Details
bioinformaticsdotca/AMB_2024
Repository
Owner
bioinformatics.ca
Profile Website
Contributors
benfish404 benfish404
Canadian Bioinformatics Workshops Canadian Bioinformatics Workshops
Robyn Wright Robyn Wright
zhibinlu zhibinlu
Metagenomics Microbiology Next generation sequencing
Days since last push
853
License
-
Details

About

Glittr.org is a curated list of educational material for the computational life sciences.

All material is:

  • In a GitHub or GitLab repository
  • Free to use
  • Written in markdown or similar

If you want to cite or know more about Glittr.org, check out our paper in PLOS ONE!

NOTE: This list of courses is selected only based on the above criteria.
There are no checks on quality. In case there is no license associated with the repository, copyright belongs to the author, and you cannot copy or modify it for any reason other than personal use.

Terms of use

Code for this application is available on our github.

Developed, maintained and curated by:
Geert van Geest
Patricia Palagi
Yann Haefliger

Data last updated: 2026-10-02 01:17:47

Swiss Institute of Bioinformatics

Initiative of the the SIB Training Group.
Interested in SIB courses? Visit our website.

Topics