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13 Repositories

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A collection of Galaxy-related training material
Contributors
Helena Helena
Saskia Hiltemann Saskia Hiltemann
Bérénice Batut Bérénice Batut
Björn Grüning Björn Grüning
Wendi Bacon Wendi Bacon
+ 278 more
Galaxy General Genomics Next generation sequencing Transcriptomics RNA-seq Single-cell sequencing Variant analysis ATAC-seq Comparative genomics ChIP-seq Epigenetics Genome annotation Genome assembly Metagenomics Microbiology Long read sequencing Metabolomics Proteomics Data management FAIR data Reproducibility Data science Statistics Machine learning Snakemake R Python Unix/Linux Version control
Days since last push
0
License
mit
Bioinformatics Workbook repository
Contributors
Rick Masonbrink Rick Masonbrink
Arun Seetharam Arun Seetharam
Andrew Severin Andrew Severin
Siva Chudalayandi Siva Chudalayandi
Aleksandra E. Badaczewska-Dawid Aleksandra E. Badaczewska-Dawid
+ 12 more
General Nextflow Workflows Data management Data visualization Unix/Linux ATAC-seq Comparative genomics Epigenetics Genome annotation Genome assembly Metagenomics RNA-seq Transcriptomics Variant analysis
Days since last push
63
License
mit
Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.
Contributors
Candace Savonen Candace Savonen
jhudsl-robot jhudsl-robot
cmills2 cmills2
Carrie Wright Carrie Wright
Kate Isaac Kate Isaac
+ 5 more
Genomics Next generation sequencing Transcriptomics RNA-seq Single-cell sequencing Variant analysis ATAC-seq Spatial transcriptomics Genome annotation Epigenetics ChIP-seq
Days since last push
1
License
cc-by-4.0
Contributors
Nadège Guiglielmoni Nadège Guiglielmoni
linelle linelle
Genome assembly Genome annotation Long read sequencing
Days since last push
384
License
-
Contributors
James W. MacDonald James W. MacDonald
John Lawson John Lawson
R Genome annotation
Days since last push
2288
License
-
This repository contains course materials for a workshop on structural genome annotation with BRAKER and TSEBRA
Contributors
Katharina Hoff Katharina Hoff
Genome annotation Genomics Transcriptomics RNA-seq
Days since last push
1044
License
gpl-3.0
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
Contributors
Sara Monzón Sara Monzón
Sarai Varona Sarai Varona
MiguelJulia MiguelJulia
Pedro J.  Sola Pedro J. Sola
Isabel Cuesta Isabel Cuesta
+ 1 more
Next generation sequencing Microbiology Nextflow Singularity Unix/Linux Genome assembly Genome annotation Variant analysis
Days since last push
700
License
gpl-3.0
Resources for our bioinformatics course
Contributors
Jacques Dainat Jacques Dainat
Hadrien Gourlé Hadrien Gourlé
jhayer jhayer
dependabot-support dependabot-support
General Unix/Linux Genomics Genome assembly Genome annotation Long read sequencing R Metagenomics Comparative genomics
Days since last push
1900
License
cc-by-4.0
Course website "Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions"
Contributors
Antonin Thiébaut Antonin Thiébaut
Natasha Glover Natasha Glover
Comparative genomics Transcriptomics Enrichment analysis Genome annotation Ontology
Days since last push
463
License
cc-by-4.0
Contributors
Ole Kristian Tørresen Ole Kristian Tørresen
Benedicte Garmann-Aarhus Benedicte Garmann-Aarhus
Thu-Hien To Thu-Hien To
Helle Tessand Baalsrud Helle Tessand Baalsrud
Lars Grønvold Lars Grønvold
+ 1 more
Genome assembly Genome annotation Comparative genomics
Days since last push
189
License
cc-by-4.0
Contributors
James W. MacDonald James W. MacDonald
R Genome annotation
Days since last push
1528
License
-
In this training course you will find theory and practice material for introducing yourself to wgs analysis for foodborne bacteria
Contributors
Sarai Varona Sarai Varona
Isabel Cuesta Isabel Cuesta
Sara Monzón Sara Monzón
Microbiology Next generation sequencing Galaxy Genome assembly Genome annotation Variant analysis Epidemiology
Days since last push
1423
License
-
Galaxy training for virology profiles
Contributors
Sarai Varona Sarai Varona
Sara Monzón Sara Monzón
Isabel Cuesta Isabel Cuesta
GuilleGorines GuilleGorines
Víctor López Víctor López
Microbiology Epidemiology Next generation sequencing Genome annotation
Days since last push
330
License
-

About

Glittr.org is a curated list of educational material for the computational life sciences.

All material is:

  • In a GitHub or GitLab repository
  • Free to use
  • Written in markdown or similar

If you want to cite or know more about Glittr.org, check out our paper in PLOS ONE!

NOTE: This list of courses is selected only based on the above criteria.
There are no checks on quality. In case there is no license associated with the repository, copyright belongs to the author, and you cannot copy or modify it for any reason other than personal use.

Terms of use

Developed, maintained and curated by:
Geert van Geest
Patricia Palagi
Yann Haefliger

Data last updated: 2026-10-02 01:17:47

Swiss Institute of Bioinformatics

Initiative of the the SIB Training Group.
Interested in SIB courses? Visit our website.

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