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39 Repositories
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Repository
Author
Topics
Stargazers
Days since last push
License
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Single-cell sequencing
Python
RNA-seq
Transcriptomics
Days since last push
647
License
-
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
20
License
-
A collection of Galaxy-related training material
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Single RNA-seq data analysis with R (Finland, May, 2019)
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
779
License
-
Single cell RNA sequencing analysis course
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
206
License
-
Analysis of single cell RNA-seq data course
Single-cell sequencing
RNA-seq
Transcriptomics
Days since last push
772
License
gpl-3.0
website for the rnaseq course
RNA-seq
Unix/Linux
R
Next generation sequencing
Single-cell sequencing
Days since last push
26
License
mit
The package wrapping the book, for deployment via the Bioconductor build system.
Single-cell sequencing
Transcriptomics
RNA-seq
Next generation sequencing
R
Days since last push
499
License
-
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
21
License
cc-by-4.0
A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
General
Transcriptomics
RNA-seq
Single-cell sequencing
R
Days since last push
37
License
other
A course on genomics and bioinformatics from WU
Genomics
Next generation sequencing
RNA-seq
Single-cell sequencing
Variant analysis
ChIP-seq
ATAC-seq
Epigenetics
Long read sequencing
Metagenomics
R
Python
Unix/Linux
Data visualization
Docker
Workflows
Days since last push
2
License
-
Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omics Analysis
Single-cell sequencing
RNA-seq
Transcriptomics
Days since last push
1886
License
-
Trajectory inference and differential expression over multiple conditions in scRNA-seq
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1245
License
other
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1095
License
-
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1573
License
-
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
Single-cell sequencing
RNA-seq
Transcriptomics
R
Days since last push
525
License
cc0-1.0
Tutorials for learning scverse
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
2
License
bsd-3-clause
Workshop About Tidy Transcriptomics for Single-cell RNA Sequencing Analyses
Transcriptomics
RNA-seq
R
Days since last push
519
License
other
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1063
License
gpl-3.0
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
706
License
mit
A three day hands-on workshop for researchers interested in single cell RNA-Seq
Single-cell sequencing
Transcriptomics
RNA-seq
R
Days since last push
280
License
cc0-1.0
January 2023
Single-cell sequencing
Transcriptomics
RNA-seq
Next generation sequencing
R
Days since last push
596
License
-
Introduction to single-cell RNA-seq analysis, Nov 2021, University of Cambridge
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1035
License
-
OSCA tutorial at the ISMB 2023
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
22
License
-
Single-cell RNA Sequencing Data Analysis
Single-cell sequencing
Transcriptomics
RNA-seq
Python
Days since last push
698
License
other
Topics