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44 Repositories
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Repository
Author
Topics
Stargazers
Days since last push
License
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Single-cell sequencing
Python
RNA-seq
Transcriptomics
Days since last push
842
License
-
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
7
License
-
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
General
Statistics
Next generation sequencing
Genomics
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
452
License
other
A collection of Galaxy-related training material
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Transcriptomics
Single-cell sequencing
RNA-seq
Days since last push
182
License
mit
Workshops presented by the Gladstone Bioinformatics Core
General
R
Version control
Genomics
Transcriptomics
Single-cell sequencing
RNA-seq
Pathways and Networks
Data visualization
Statistics
ATAC-seq
Machine learning
Unix/Linux
Days since last push
8
License
-
Single RNA-seq data analysis with R (Finland, May, 2019)
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
974
License
-
Single cell RNA sequencing analysis course
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
0
License
-
Analysis of single cell RNA-seq data course
Single-cell sequencing
RNA-seq
Transcriptomics
Days since last push
967
License
gpl-3.0
website for the rnaseq course
RNA-seq
Unix/Linux
R
Next generation sequencing
Single-cell sequencing
Days since last push
109
License
mit
The package wrapping the book, for deployment via the Bioconductor build system.
Single-cell sequencing
Transcriptomics
RNA-seq
Next generation sequencing
R
Days since last push
148
License
-
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
20
License
cc-by-4.0
A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
General
Transcriptomics
RNA-seq
Single-cell sequencing
R
Pathways and Networks
Days since last push
18
License
other
A course on genomics and bioinformatics from WU
Genomics
Next generation sequencing
RNA-seq
Variant analysis
Data visualization
Long read sequencing
Single-cell sequencing
Days since last push
0
License
-
Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omics Analysis
Single-cell sequencing
RNA-seq
Transcriptomics
Days since last push
2081
License
-
Trajectory inference and differential expression over multiple conditions in scRNA-seq
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1440
License
other
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1290
License
-
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1768
License
-
Tutorials for learning scverse
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
0
License
bsd-3-clause
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
Single-cell sequencing
RNA-seq
Transcriptomics
R
Days since last push
720
License
cc0-1.0
Workshop About Tidy Transcriptomics for Single-cell RNA Sequencing Analyses
Single-cell sequencing
R
RNA-seq
Transcriptomics
Days since last push
713
License
other
Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Spatial transcriptomics
Genome annotation
Epigenetics
ChIP-seq
Days since last push
34
License
cc-by-4.0
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1258
License
gpl-3.0
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
901
License
mit
Repository for single cell RNAseq course of the Danish Health Data Science Sandbox project.
Single-cell sequencing
RNA-seq
Transcriptomics
Python
R
Days since last push
692
License
apache-2.0
Topics