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35 Repositories
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Repository
Author
Topics
Stargazers
Days since last push
License
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
19
License
cc-by-4.0
Python
Days since last push
9
License
cc-by-4.0
repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
Python
Days since last push
54
License
cc-by-4.0
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
R
Days since last push
281
License
cc-by-4.0
Machine learning
Statistics
Days since last push
51
License
cc-by-4.0
Course website "Docker and Singularity for reproducible research: getting started with containers"
Containerization
Docker
Singularity
Days since last push
30
License
cc-by-4.0
Statistics
Days since last push
190
License
cc-by-4.0
GitHub for the SIB courses NGS - Genome variant analysis
Next generation sequencing
Variant analysis
Days since last push
77
License
cc-by-4.0
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1158
License
-
Statistics
Machine learning
Days since last push
337
License
cc-by-4.0
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1637
License
-
SIB course that introduces analysis of NGS data
Next generation sequencing
Genomics
Days since last push
6
License
cc-by-4.0
pratrical crash course on pytorch by reproducing some published biology-related deep-learning models
Machine learning
Python
Days since last push
12
License
cc-by-4.0
Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
Transcriptomics
RNA-seq
Pathways and Networks
Days since last push
64
License
cc-by-4.0
Multiomics
R
Statistics
Days since last push
154
License
other
material for the "Introduction to Statistics with Python" SIB-training course
Statistics
Python
Days since last push
337
License
cc-by-4.0
Long read sequencing
Days since last push
84
License
other
Course material for Enrichment analysis course by SIB
R
Enrichment analysis
Days since last push
146
License
other
This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
SPARQL
Data management
Days since last push
17
License
-
Webpage for SIB's advanced statistics course
Statistics
Days since last push
440
License
other
SIB First Steps with UNIX course
Unix/Linux
Days since last push
70
License
-
Course website "Introduction to Containers and Snakemake for Reproducible Research"
Workflows
Containerization
Snakemake
Singularity
Docker
Days since last push
23
License
cc-by-4.0
Repository for the workshop "Introduction to Snakemake" @ SIB-Days 2022
Workflows
Snakemake
Days since last push
889
License
gpl-3.0
Statistics
R
Days since last push
296
License
other
Nextflow course 2021
Workflows
Nextflow
Days since last push
1079
License
-
Topics