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54 Repositories
Page 1 / 3
Repository
Owner
Contributors
Topics
Stargazers
Days since last push
ELIXIR Research Data Management Toolkit - Find the answers to your research data management questions here.
Contributors
Bert Droesbeke
floradanna
Korbinian Bösl
Munazah
Federico Bianchini
Data management
FAIR data
Days since last push
3
License
other
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
cc-by-4.0
Contributors
Geert van Geest
TaniaW
Rachel Marcone
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
248
License
cc-by-4.0
Contributors
Robin Engler
Wandrille D.
SIB Git course
Diana Marek
Python
Data science
Days since last push
159
License
cc-by-4.0
Contributors
rellum-sukram
idupanloup
Wandrille D.
Patricia Palagi
SebastienBoyer
Machine learning
Statistics
Days since last push
51
License
cc-by-4.0
repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
cc-by-4.0
Contributors
Robin Engler
Wandrille D.
Orlin Topalov
Python
Days since last push
51
License
cc-by-4.0
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
cc-by-4.0
Contributors
Wandrille D.
Diana Marek
fburdet
R
Days since last push
196
License
cc-by-4.0
Contributors
Wandrille D.
Statistics
Machine learning
Days since last push
166
License
cc-by-4.0
SIB course on bayesian statistics with applications using Rstan
cc-by-4.0
Contributors
Jack Kuipers
Wandrille D.
Patricia Palagi
Statistics
Days since last push
356
License
cc-by-4.0
Contributors
florence mehl
vanduttran
jboccard
Multiomics
R
Statistics
Days since last push
199
License
other
Course website "Docker and Singularity for reproducible research: getting started with containers"
cc-by-4.0
Contributors
Geert van Geest
Antonin Thiébaut
Yann Haefliger
rriupu
Jcarlevaro
Containerization
Docker
Singularity
Days since last push
100
License
cc-by-4.0
pratrical crash course on pytorch by reproducing some published biology-related deep-learning models
cc-by-4.0
Contributors
vanduttran
Wandrille D.
Machine learning
Python
Days since last push
291
License
cc-by-4.0
GitHub for the SIB courses NGS - Genome variant analysis
cc-by-4.0
Contributors
Geert van Geest
Patricia Palagi
Next generation sequencing
Variant analysis
Days since last push
90
License
cc-by-4.0
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
Contributors
Emma Dann
Panagiotis Papasaikas
Åsa Björklund
greg-r-sib
Volker Bergen
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
1827
License
-
Contributors
Vincent Emonet
Ana Claudia Sima
Ruijie Wang
Panayiotis Smeros
Large language models
Python
Artificial intelligence
Days since last push
109
License
mit
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
Contributors
Michael Stadler
Mike Smith
Avi Srivastava
Charlotte Soneson
Single-cell sequencing
Transcriptomics
RNA-seq
Days since last push
2305
License
-
material for the "Introduction to Statistics with Python" SIB-training course
cc-by-4.0
Contributors
Wandrille D.
Statistics
Python
Days since last push
471
License
cc-by-4.0
SIB course that introduces analysis of NGS data
cc-by-4.0
Contributors
Geert van Geest
Deepak Tanwar
Patricia Palagi
fburdet
Flavio Lombardo
Next generation sequencing
Long read sequencing
Unix/Linux
Days since last push
161
License
cc-by-4.0
Webpage for SIB's advanced statistics course
Contributors
Rachel Marcone
TaniaW
Statistics
Days since last push
6
License
other
Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
cc-by-4.0
Contributors
Alex SMITH
Wandrille D.
Transcriptomics
RNA-seq
Pathways and Networks
Days since last push
68
License
cc-by-4.0
Contributors
Geert van Geest
Jcarlevaro
Long read sequencing
Days since last push
206
License
other
Course website "Introduction to Containers and Snakemake for Reproducible Research"
cc-by-4.0
Contributors
Antonin Thiébaut
Geert van Geest
rriupu
Workflows
Containerization
Snakemake
Singularity
Docker
Days since last push
67
License
cc-by-4.0
Course material for Enrichment analysis course by SIB
Contributors
TaniaW
R
Enrichment analysis
Days since last push
230
License
other
SIB First Steps with UNIX course
Contributors
Robin Engler
Unix/Linux
Days since last push
382
License
-
Contributors
Flavio Lombardo
Geert van Geest
Variant analysis
Next generation sequencing
Genomics
Days since last push
0
License
cc-by-4.0
This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
Contributors
A. Morgat
Jerven Bolleman
lynma01
SPARQL
Data management
Days since last push
685
License
-
Topics