30 Repositories

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SIB course on single cell transcriptomics by mostly using the Seurat pipeline
Author
SIB Swiss Institute of Bioinformatics
Single-cell sequencing Transcriptomics RNA-seq
Days since last push
32
License
cc-by-4.0
repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
Author
SIB Swiss Institute of Bioinformatics
Python
Days since last push
97
License
cc-by-4.0
Author
SIB Swiss Institute of Bioinformatics
Python
Days since last push
31
License
cc-by-4.0
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
Author
SIB Swiss Institute of Bioinformatics
R
Days since last push
131
License
cc-by-4.0
Course website "Docker and Singularity for reproducible research: getting started with containers"
Author
SIB Swiss Institute of Bioinformatics
Containerization Docker Singularity
Days since last push
23
License
cc-by-4.0
Author
SIB Swiss Institute of Bioinformatics
Machine learning Statistics
Days since last push
54
License
cc-by-4.0
GitHub for the SIB courses NGS - Genome variant analysis
Author
SIB Swiss Institute of Bioinformatics
Next generation sequencing Variant analysis
Days since last push
116
License
cc-by-4.0
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
Author
NBIS - National Bioinformatics Infrastructure Sweden
Single-cell sequencing Transcriptomics RNA-seq
Days since last push
1008
License
-
Author
SIB Swiss Institute of Bioinformatics
Statistics
Days since last push
40
License
cc-by-4.0
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
Author
fmicompbio
Single-cell sequencing Transcriptomics RNA-seq
Days since last push
1486
License
-
Author
SIB Swiss Institute of Bioinformatics
Statistics Machine learning
Days since last push
187
License
cc-by-4.0
Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
Author
SIB Swiss Institute of Bioinformatics
Transcriptomics RNA-seq Pathways and Networks
Days since last push
187
License
cc-by-4.0
SIB course that introduces analysis of NGS data
Author
SIB Swiss Institute of Bioinformatics
Next generation sequencing Genomics
Days since last push
67
License
cc-by-4.0
material for the "Introduction to Statistics with Python" SIB-training course
Author
SIB Swiss Institute of Bioinformatics
Statistics Python
Days since last push
187
License
cc-by-4.0
Webpage for SIB's advanced statistics course
Author
SIB Swiss Institute of Bioinformatics
Statistics
Days since last push
290
License
other
This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
Author
SIB Swiss Institute of Bioinformatics
Data management
Days since last push
107
License
-
Course material for Enrichment analysis course by SIB
Author
SIB Swiss Institute of Bioinformatics
R Enrichment analysis
Days since last push
104
License
other
Author
SIB Swiss Institute of Bioinformatics
Long read sequencing
Days since last push
109
License
other
Repository for the workshop "Introduction to Snakemake" @ SIB-Days 2022
Author
Romain Feron
Workflows Snakemake
Days since last push
739
License
gpl-3.0
Author
SIB Swiss Institute of Bioinformatics
Multiomics R Statistics
Days since last push
4
License
other
Course website "Introduction to Containers and Snakemake for Reproducible Research"
Author
SIB Swiss Institute of Bioinformatics
Workflows Containerization Snakemake Singularity Docker
Days since last push
207
License
cc-by-sa-4.0
SIB First Steps with UNIX course
Author
SIB Swiss Institute of Bioinformatics
Unix/Linux
Days since last push
159
License
-
pratrical crash course on pytorch by reproducing some published biology-related deep-learning models
Author
SIB Swiss Institute of Bioinformatics
Machine learning Python
Days since last push
187
License
cc-by-4.0
Author
SIB Swiss Institute of Bioinformatics
Statistics R
Days since last push
146
License
other
Author
Biocore@CRG
Workflows Nextflow
Days since last push
929
License
-

About

Glittr.org is a curated list of bioinformatics training material.
All material is:

  • In a GitHub or GitLab repository
  • Free to use
  • Written in markdown or similar

NOTE: This list of courses is selected only based on the above criteria.
There are no checks on quality.

Terms of use

Developed, maintained and curated by:
Geert van Geest
Patricia Palagi
Yann Haefliger

Data last updated: 2024-06-23 13:05:38

Swiss Institute of Bioinformatics

Initiative of the the SIB Training Group.
Interested in SIB courses? Visit our website.

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