22 Repositories

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SIB course on single cell transcriptomics by mostly using the Seurat pipeline
Author
SIB Swiss Institute of Bioinformatics
RNA-seq Single-cell sequencing Transcriptomics
Days since last push
15
License
cc-by-sa-4.0
repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
Author
SIB Swiss Institute of Bioinformatics
Python
Days since last push
75
License
other
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
Author
SIB Swiss Institute of Bioinformatics
R
Days since last push
114
License
other
GitHub for the SIB courses NGS - Genome variant analysis
Author
SIB Swiss Institute of Bioinformatics
Next generation sequencing Variant analysis
Days since last push
99
License
cc-by-sa-4.0
Course website "Docker and Singularity for reproducible research: getting started with containers"
Author
SIB Swiss Institute of Bioinformatics
Containerization Docker Singularity
Days since last push
35
License
cc-by-sa-4.0
Author
SIB Swiss Institute of Bioinformatics
Python
Days since last push
0
License
other
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
Author
fmicompbio
RNA-seq Single-cell sequencing Transcriptomics
Days since last push
1097
License
-
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
Author
NBIS - National Bioinformatics Infrastructure Sweden
RNA-seq Single-cell sequencing Transcriptomics
Days since last push
619
License
-
Author
SIB Swiss Institute of Bioinformatics
Statistics
Days since last push
8
License
other
Author
SIB Swiss Institute of Bioinformatics
Machine learning Statistics
Days since last push
19
License
cc0-1.0
SIB course that introduces analysis of NGS data
Author
SIB Swiss Institute of Bioinformatics
Genomics Next generation sequencing
Days since last push
14
License
cc-by-sa-4.0
Author
SIB Swiss Institute of Bioinformatics
Machine learning Statistics
Days since last push
147
License
cc-by-4.0
Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
Author
SIB Swiss Institute of Bioinformatics
RNA-seq Transcriptomics
Days since last push
226
License
-
This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
Author
SIB Swiss Institute of Bioinformatics
Data management
Days since last push
111
License
-
Author
SIB Swiss Institute of Bioinformatics
Long read sequencing
Days since last push
78
License
other
material for the "Introduction to Statistics with Python" SIB-training course
Author
SIB Swiss Institute of Bioinformatics
Python Statistics
Days since last push
0
License
other
Author
Biocore@CRG
Nextflow Workflows
Days since last push
540
License
-
Course material for Enrichment analysis course by SIB
Author
SIB Swiss Institute of Bioinformatics
R Enrichment analysis
Days since last push
62
License
other
SIB First Steps with UNIX course
Author
SIB Swiss Institute of Bioinformatics
Unix/Linux
Days since last push
141
License
-
Webpage for SIB's advanced statistics course
Author
SIB Swiss Institute of Bioinformatics
Statistics
Days since last push
168
License
other
Author
SIB Swiss Institute of Bioinformatics
R Statistics
Days since last push
111
License
other
Author
SIB Swiss Institute of Bioinformatics
R Multiomics Statistics
Days since last push
56
License
other

About

Glittr is a curated list of bioinformatics training material.
All material is:

  • In a GitHub or GitLab repository
  • Free to use
  • Written in markdown or similar

NOTE: This list of courses is selected only based on the above criteria.
There are no checks on quality.

Developed, maintained and curated by:
Geert van Geest
Patricia Palagi
Yann Haefliger

Data last updated: 2023-06-01 01:02:11

Swiss Institute of Bioinformatics

Initiative of the the SIB Training Group.
Interested in SIB courses? Visit our website.

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