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30 Repositories
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Repository
Author
Topics
Stargazers
Days since last push
License
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
RNA-seq
Single-cell sequencing
Transcriptomics
63
Days since last push
12
License
cc-by-sa-4.0
repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
Python
41
Days since last push
35
License
other
Python
37
Days since last push
1
License
other
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
R
33
Days since last push
35
License
other
Course website "Docker and Singularity for reproducible research: getting started with containers"
Containerization
Docker
Singularity
22
Days since last push
26
License
cc-by-sa-4.0
Machine learning
Statistics
22
Days since last push
35
License
cc0-1.0
GitHub for the SIB courses NGS - Genome variant analysis
Next generation sequencing
Variant analysis
22
Days since last push
26
License
cc-by-sa-4.0
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
RNA-seq
Single-cell sequencing
Transcriptomics
19
Days since last push
800
License
-
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
RNA-seq
Single-cell sequencing
Transcriptomics
17
Days since last push
1279
License
-
Statistics
17
Days since last push
159
License
other
Machine learning
Statistics
13
Days since last push
0
License
cc-by-4.0
SIB course that introduces analysis of NGS data
Genomics
Next generation sequencing
11
Days since last push
5
License
cc-by-sa-4.0
Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
RNA-seq
Transcriptomics
Pathways and Networks
11
Days since last push
68
License
-
Webpage for SIB's advanced statistics course
Statistics
7
Days since last push
83
License
other
material for the "Introduction to Statistics with Python" SIB-training course
Python
Statistics
6
Days since last push
159
License
other
This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
Data management
6
Days since last push
292
License
-
Long read sequencing
4
Days since last push
259
License
other
Repository for the workshop "Introduction to Snakemake" @ SIB-Days 2022
Snakemake
Workflows
3
Days since last push
532
License
gpl-3.0
pratrical crash course on pytorch by reproducing some published biology-related deep-learning models
Python
Machine learning
3
Days since last push
14
License
cc-by-sa-4.0
Course website "Introduction to Containers and Snakemake for Reproducible Research"
Containerization
Docker
Singularity
Snakemake
Workflows
3
Days since last push
25
License
cc-by-sa-4.0
SIB First Steps with UNIX course
Unix/Linux
3
Days since last push
96
License
-
R
Multiomics
Statistics
2
Days since last push
99
License
other
Nextflow course 2021
Nextflow
Workflows
2
Days since last push
721
License
-
Course material for Enrichment analysis course by SIB
R
Enrichment analysis
2
Days since last push
159
License
other
Data science
Statistics
1
Days since last push
237
License
other
Topics