Selected topics (1)

21 Repositories

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Using Git and GitHub with R, Rstudio, and R Markdown
Author
Jennifer (Jenny) Bryan
R Version control
Days since last push
35
License
other
Version Control with Git
Author
Software Carpentry
Version control
Days since last push
6
License
other
Materials for short, half-day workshops
Author
Teaching materials at the Harvard Chan Bioinformatics Core
General FAIR data Data visualization Python R Rmarkdown Unix/Linux Version control Enrichment analysis RNA-seq Transcriptomics Variant analysis
Days since last push
4
License
-
Melbourne Bioinformatics documentation in markdown format
Author
Melbourne Bioinformatics
General Data management Unix/Linux Version control Genomics RNA-seq Transcriptomics
Days since last push
94
License
-
Education tutorials
Author
Women In Bioinformatics and Data Science Latin America
General Python Unix/Linux Version control
Days since last push
430
License
cc0-1.0
:octocat: A basic git and Linux bash CLI training
Author
Kottans
Version control
Days since last push
647
License
mit
Lecture notes/book in progress on computing for conservation genomics
Author
Eric C. Anderson
General R Unix/Linux Version control Genome assembly Genomics Variant analysis
Days since last push
91
License
mit
Version control training course using Git
Author
Gerard Capes
Version control
Days since last push
3
License
other
Python course material - SDIA Python
Author
Guillaume Gautier
Python Version control
Days since last push
931
License
mit
Introduction to Reproducible Publications with Quarto
Author
carpentries-incubator
Reproducibility R Rmarkdown Version control
Days since last push
84
License
other
Carpentry-style lesson on how to use R, RStudio together with git & Github to promote Open Science practices.
Author
carpentries-incubator
Reproducibility R Version control
Days since last push
936
License
other
Reproducible Science Curriculum Lesson for Version Control
Author
Data Carpentry
R Version control
Days since last push
502
License
other
Author
Teaching materials at the Harvard Chan Bioinformatics Core
Reproducibility R Rmarkdown Version control
Days since last push
872
License
-
This is a test-repository for the GitHub tutorial.
Author
VIB Technologies: Bioinformatics and software projects
Version control
Days since last push
89
License
-
How to set up your GIT repo and useful GIT commands
Author
BioinfGuru
Version control
Days since last push
410
License
gpl-3.0
Author
Sergio Martínez Cuesta
Version control
Days since last push
2035
License
gpl-3.0
Author
Sergio Martínez Cuesta
Version control
Days since last push
2068
License
-
Author
Sergio Martínez Cuesta
Version control
Days since last push
1677
License
gpl-3.0
Author
Functional Genomics Laboratory
Containerization High performance computing Nextflow Singularity Reproducibility Unix/Linux Version control ChIP-seq Epigenetics Genomics RNA-seq Variant analysis Julia
Days since last push
21
License
-
Author
carpentries-incubator
Version control
Days since last push
6
License
other
Author
NBIS - National Bioinformatics Infrastructure Sweden
Version control
Days since last push
5
License
other

About

Glittr.org is a curated list of bioinformatics training material.
All material is:

  • In a GitHub or GitLab repository
  • Free to use
  • Written in markdown or similar

NOTE: This list of courses is selected only based on the above criteria.
There are no checks on quality.

Terms of use

Developed, maintained and curated by:
Geert van Geest
Patricia Palagi
Yann Haefliger

Data last updated: 2024-04-29 13:05:26

Swiss Institute of Bioinformatics

Initiative of the the SIB Training Group.
Interested in SIB courses? Visit our website.

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