Is your (favourite) course not in there? Is a link dead? Did you find a typo?
Any contribution to this list is highly appreciated!
Selected topics (1)
31 Repositories
Page 1 / 2
Repository
Author
Topics
Stargazers
Days since last push
License
Using Git and GitHub with R, Rstudio, and R Markdown
R
Version control
Days since last push
47
License
other
The biggest collection of R books (and maybe later some other resources too)
R
Data science
Data visualization
Machine learning
Statistics
Version control
Workflows
Days since last push
39
License
-
Version Control with Git
Version control
Days since last push
1
License
other
A collection of Galaxy-related training material
Galaxy
General
Genomics
Next generation sequencing
Transcriptomics
RNA-seq
Single-cell sequencing
Variant analysis
ATAC-seq
Comparative genomics
ChIP-seq
Epigenetics
Genome annotation
Genome assembly
Metagenomics
Microbiology
Long read sequencing
Metabolomics
Proteomics
Data management
FAIR data
Reproducibility
Data science
Statistics
Machine learning
Snakemake
R
Python
Unix/Linux
Version control
Days since last push
0
License
mit
Materials for short, half-day workshops
General
Python
R
Rmarkdown
Unix/Linux
Version control
Enrichment analysis
FAIR data
Data visualization
Variant analysis
RNA-seq
Transcriptomics
Days since last push
0
License
other
Workshops presented by the Gladstone Bioinformatics Core
General
R
Version control
Genomics
Transcriptomics
Single-cell sequencing
RNA-seq
Pathways and Networks
Data visualization
Statistics
ATAC-seq
Machine learning
Unix/Linux
Days since last push
16
License
-
Melbourne Bioinformatics documentation in markdown format
General
Unix/Linux
Data management
Transcriptomics
RNA-seq
Genomics
Version control
Days since last push
107
License
-
OBOAcademy/obook
106
OBO Organized Knowledge: Training materials for becoming an OBO engineer
Data management
Ontology
Knowledge graph
Version control
FAIR data
GNU Make
SPARQL
Days since last push
13
License
cc0-1.0
Education tutorials
General
Version control
Unix/Linux
Python
Days since last push
755
License
cc0-1.0
Lecture notes/book in progress on computing for conservation genomics
General
Unix/Linux
Version control
R
Genomics
Variant analysis
Genome assembly
Days since last push
415
License
mit
:octocat: A basic git and Linux bash CLI training
Version control
Days since last push
972
License
mit
Version control training course using Git
Version control
Days since last push
36
License
other
Python course material - SDIA Python
Python
Version control
Days since last push
1255
License
mit
Good Enough Practices in Scientific Computing
Reproducibility
Data management
Version control
Days since last push
1
License
other
Introduction to Reproducible Publications with Quarto
R
Version control
Rmarkdown
Reproducibility
Days since last push
56
License
other
Reproducibility
Version control
R
Rmarkdown
Days since last push
218
License
-
Carpentry-style lesson on how to use R, RStudio together with git & Github to promote Open Science practices.
R
Reproducibility
Version control
Days since last push
1260
License
other
Reproducible Science Curriculum Lesson for Version Control
Version control
R
Reproducibility
Days since last push
827
License
other
This is a Git & GitHub course material
Version control
Days since last push
12
License
-
Version control
Containerization
Docker
Days since last push
219
License
cc-by-sa-4.0
How to set up your GIT repo and useful GIT commands
Version control
Days since last push
734
License
gpl-3.0
Version control
Days since last push
2359
License
gpl-3.0
This course introduces more advanced tools to increase the reproducibility of data analyses; building upon the Intro to Reproducibility course. GitHub, Docker, Code Review, and GitHub actions are discussed.
Data management
Reproducibility
Version control
Docker
Days since last push
21
License
cc-by-4.0
Version control
Days since last push
2392
License
-
Version control
Days since last push
2001
License
gpl-3.0
Topics